Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   LQT99_RS10775 Genome accession   NZ_CP088005
Coordinates   2222209..2223699 (-) Length   496 a.a.
NCBI ID   WP_032873242.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain bm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217209..2228699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS10745 (LQT99_10730) gudB 2217298..2218572 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  LQT99_RS10750 (LQT99_10735) - 2218733..2219317 (-) 585 WP_003153412.1 genetic competence negative regulator -
  LQT99_RS10755 (LQT99_10740) - 2219469..2220257 (-) 789 WP_032873245.1 metallophosphoesterase -
  LQT99_RS10760 (LQT99_10745) - 2220344..2220802 (-) 459 WP_007409443.1 YpbF family protein -
  LQT99_RS10765 (LQT99_10750) - 2220871..2221629 (-) 759 WP_032873244.1 LysM peptidoglycan-binding domain-containing protein -
  LQT99_RS10770 (LQT99_10755) - 2221607..2222194 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  LQT99_RS10775 (LQT99_10760) recS 2222209..2223699 (-) 1491 WP_032873242.1 ATP-dependent DNA helicase RecQ Machinery gene
  LQT99_RS10780 (LQT99_10765) - 2223692..2224750 (-) 1059 WP_032873240.1 helix-turn-helix domain-containing protein -
  LQT99_RS10785 (LQT99_10770) - 2225019..2225267 (+) 249 WP_003153403.1 ferredoxin -
  LQT99_RS10790 (LQT99_10775) - 2225404..2225976 (-) 573 WP_003153402.1 ECF transporter S component -
  LQT99_RS10795 (LQT99_10780) serA 2226465..2228042 (+) 1578 WP_032873237.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55975.01 Da        Isoelectric Point: 6.2487

>NTDB_id=547145 LQT99_RS10775 WP_032873242.1 2222209..2223699(-) (recS) [Bacillus amyloliquefaciens strain bm]
MTELHKALSKYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTSDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDESYEPEGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=547145 LQT99_RS10775 WP_032873242.1 2222209..2223699(-) (recS) [Bacillus amyloliquefaciens strain bm]
ATGACTGAGCTGCATAAAGCTTTATCCAAGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAGGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATTCTCAGCAACATCAGCAGGTATAA
ATTTCTCTATATGTCCCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAACGTTCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTAACCGCAACAGCGACAAAAGAAACACTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCGGATAATG
CCGAGAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGTACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCTGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGATCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGAGTGATGAACGAAAGCTTC
GGGACGTTCTGATCAACAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACAACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAATCGTATGAGCCTGAAGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685