Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J0X00_RS10775 Genome accession   NZ_CP071708
Coordinates   990468..991475 (-) Length   335 a.a.
NCBI ID   WP_136485348.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 985468..996475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS10750 (J0X00_10750) rraA 986057..986611 (-) 555 WP_136485337.1 ribonuclease E activity regulator RraA -
  J0X00_RS10755 (J0X00_10755) - 986687..987604 (-) 918 WP_136485339.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  J0X00_RS10760 (J0X00_10760) hslU 987731..989062 (-) 1332 WP_136485341.1 HslU--HslV peptidase ATPase subunit -
  J0X00_RS10765 (J0X00_10765) hslV 989096..989653 (-) 558 WP_218562634.1 ATP-dependent protease subunit HslV -
  J0X00_RS10770 (J0X00_10770) - 989785..990339 (-) 555 WP_136485346.1 SPOR domain-containing protein -
  J0X00_RS10775 (J0X00_10775) cytR 990468..991475 (-) 1008 WP_136485348.1 DNA-binding transcriptional regulator CytR Regulator
  J0X00_RS10780 (J0X00_10780) priA 991800..994001 (-) 2202 WP_282478038.1 primosomal protein N' -
  J0X00_RS10785 (J0X00_10785) rpmE 994354..994572 (+) 219 WP_136485352.1 50S ribosomal protein L31 -
  J0X00_RS10790 (J0X00_10790) - 994809..996086 (+) 1278 WP_136485354.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36756.01 Da        Isoelectric Point: 5.0731

>NTDB_id=547142 J0X00_RS10775 WP_136485348.1 990468..991475(-) (cytR) [Vibrio sp. ABG19]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPDTAVLCQFRQQGYQQALRRSGITRNPDYSVSGDFSFESGAQAVRQLLALSEPPTA
IFCHNDTMAIGAIQEAKRLGTRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGNDVQAGSRLLE
TQLVVRDSAAPPCAI

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=547142 J0X00_RS10775 WP_136485348.1 990468..991475(-) (cytR) [Vibrio sp. ABG19]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCAACGGCGACCGTATCGCGTGCTCTGATGAATCCCGAGAA
AGTCTCATCCTCGACCCGTAAACGGGTTGAAGAGGCGGTGTTAGAAGCTGGTTATTCCCCTAACTCTCTCGCGCGCAATC
TGCGTCGCAATGAGTCCAAAACGATTGTGGCCATTGTGCCGGATATCTGTGACCCGTATTACACCGAGATCATCCGCGGC
ATTGAAGATGCGGCGATGGAACACGGTTATCTGGTGCTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTCACCAAGCAGGCGGACGGTATGTTGCTGCTCGGGACCGACCTGCCGTTTGATGTCAGTAAGCCGG
AACAGAAAAACCTGCCGCCGATGGTGATGGCGTGTGAGTTTGCCCCGGAACTGGAGCTGCCCACGGTACATATTGATAAC
CTGACCTCGGCGTTTGAAGCGGTGAACTATCTGACCCAGATGGGCCACAAACGGGTGGCGCAAATTGCCGGCCCGGATAC
GGCCGTTCTGTGCCAGTTCCGCCAGCAAGGTTACCAGCAGGCGCTGCGCCGCTCCGGGATTACCCGCAATCCAGACTACA
GTGTGAGCGGTGATTTCTCATTTGAATCGGGTGCTCAGGCGGTGCGTCAGCTGCTGGCGTTGTCCGAGCCGCCGACGGCG
ATTTTCTGCCACAACGATACCATGGCGATTGGAGCGATTCAGGAAGCCAAACGTCTGGGTACGCGAGTGCCGCAGGATCT
TTCCGTGGTCGGTTTCGATGACATTCAGTTTGCCCAGTACTGCGATCCACCGCTGACCACCATTTCTCAGCCGCGTTATG
AGATTGGCCGCCAGGCAATGCTGATGATGCTGGAATTGCTGCGTGGCAACGATGTTCAGGCCGGTTCACGTTTACTGGAA
ACCCAGCTGGTGGTACGCGACAGCGCGGCTCCGCCATGTGCAATCTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

91.867

99.104

0.91
  cytR Vibrio parahaemolyticus RIMD 2210633

90.964

99.104

0.901