Detailed information NTG0547116

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: LQT99_RS06900
• Genome accession: NZ_CP088005
• Coordinates: 1321216..1323312 (-)
• Length: 698 a.a.
• NCBI ID: WP_032874707.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain bm
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 1316216..1328312

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQT99_RS06875 (LQT99_06870)	-	1316805..1317065 (+)	261	WP_003154690.1	aspartyl-phosphate phosphatase Spo0E family protein	-
LQT99_RS06880 (LQT99_06875)	-	1317276..1318793 (-)	1518	WP_046559543.1	ATP-binding protein	-
LQT99_RS06885 (LQT99_06880)	-	1318992..1319438 (+)	447	WP_003154686.1	MarR family transcriptional regulator	-
LQT99_RS06890 (LQT99_06885)	motB	1319474..1320259 (-)	786	WP_003154685.1	flagellar motor protein MotB	-
LQT99_RS06895 (LQT99_06890)	motA	1320231..1321046 (-)	816	WP_007408461.1	flagellar motor stator protein MotA	-
LQT99_RS06900 (LQT99_06895)	clpE	1321216..1323312 (-)	2097	WP_032874707.1	ATP-dependent protease ATP-binding subunit ClpE	Regulator
LQT99_RS06905 (LQT99_06900)	-	1323713..1324750 (+)	1038	WP_032874708.1	membrane protein	-
LQT99_RS06910 (LQT99_06905)	-	1324848..1325969 (+)	1122	WP_032874709.1	hypothetical protein	-
LQT99_RS06915 (LQT99_06910)	queC	1326219..1326878 (+)	660	WP_003154679.1	7-cyano-7-deazaguanine synthase QueC	-
LQT99_RS06920 (LQT99_06915)	queD	1326879..1327319 (+)	441	WP_007611020.1	6-carboxytetrahydropterin synthase QueD	-
LQT99_RS06925 (LQT99_06920)	queE	1327312..1328043 (+)	732	WP_003154676.1	7-carboxy-7-deazaguanine synthase QueE	-

Sequence

Protein

• Length: 698 a.a.
• Molecular weight: 77775.78 Da
• Isoelectric Point: 5.2952

>NTDB_id=547116 LQT99_RS06900 WP_032874707.1 1321216..1323312(-) (clpE) [Bacillus amyloliquefaciens strain bm]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDNEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALHEENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVLEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLNVTDD
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide

• Length: 2097 bp

>NTDB_id=547116 LQT99_RS06900 WP_032874707.1 1321216..1323312(-) (clpE) [Bacillus amyloliquefaciens strain bm]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATAATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAGCCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAGGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAACGTTATCTTGTT
CATTGATGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
CGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCATGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCGTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGGGCGG
AGCATATTCAAGCCATCATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGCGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATTATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGGCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTGGGATTCCAATCTGAAGAGAGCGTCCTGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATTATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAACGTCACCGATGAT
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCAGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATGACAACGAAATAAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (252-351)

• AAA domain (Cdc48 subfamily) (AAA_2) (436-602)

• ATPase family associated with various cellular activities (AAA) (AAA) (115-246)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	56.871	100	0.599
clpC	Lactococcus lactis subsp. cremoris KW2	56.54	100	0.595
clpE	Streptococcus pneumoniae Rx1	56.131	100	0.59
clpE	Streptococcus pneumoniae R6	56.131	100	0.59
clpE	Streptococcus pneumoniae D39	56.131	100	0.59
clpE	Streptococcus pneumoniae TIGR4	56.131	100	0.59
clpC	Bacillus subtilis subsp. subtilis str. 168	54.232	91.404	0.496
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.311	91.261	0.423
clpC	Streptococcus thermophilus LMD-9	44.154	93.123	0.411
clpC	Streptococcus pneumoniae TIGR4	45.88	88.682	0.407
clpC	Streptococcus pneumoniae Rx1	45.88	88.682	0.407
clpC	Streptococcus pneumoniae D39	45.88	88.682	0.407
clpC	Streptococcus thermophilus LMG 18311	43.538	93.123	0.405
clpC	Streptococcus mutans UA159	44.3	87.966	0.39