Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   LQT99_RS05390 Genome accession   NZ_CP088005
Coordinates   1046772..1050164 (+) Length   1130 a.a.
NCBI ID   WP_032874396.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain bm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1041772..1055164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS05380 (LQT99_05375) addA 1041834..1045538 (+) 3705 WP_032875181.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  LQT99_RS05385 (LQT99_05380) sbcD 1045603..1046775 (+) 1173 WP_032874394.1 exonuclease subunit SbcD -
  LQT99_RS05390 (LQT99_05385) sbcC 1046772..1050164 (+) 3393 WP_032874396.1 exonuclease subunit SbcC Machinery gene
  LQT99_RS05395 (LQT99_05390) - 1050180..1050473 (+) 294 WP_032874399.1 hypothetical protein -
  LQT99_RS05400 (LQT99_05395) - 1050517..1050735 (-) 219 WP_003155143.1 spore germination protein -
  LQT99_RS05405 (LQT99_05400) - 1050775..1051170 (-) 396 WP_014417372.1 spore germination protein GerPE -
  LQT99_RS05410 (LQT99_05405) - 1051170..1051346 (-) 177 WP_003155141.1 hypothetical protein -
  LQT99_RS05415 (LQT99_05410) - 1051343..1051960 (-) 618 WP_003155139.1 spore germination protein GerPC -
  LQT99_RS05420 (LQT99_05415) - 1051996..1052232 (-) 237 WP_007409164.1 spore germination protein GerPB -
  LQT99_RS05425 (LQT99_05420) - 1052245..1052466 (-) 222 WP_003155135.1 spore germination protein -
  LQT99_RS05430 (LQT99_05425) - 1052656..1052871 (-) 216 WP_032874401.1 aspartyl-phosphate phosphatase Spo0E family protein -
  LQT99_RS05435 (LQT99_05430) - 1053089..1053994 (+) 906 WP_031378473.1 fumarylacetoacetate hydrolase family protein -
  LQT99_RS05440 (LQT99_05435) - 1054088..1054444 (+) 357 WP_007409161.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128315.36 Da        Isoelectric Point: 5.6164

>NTDB_id=547101 LQT99_RS05390 WP_032874396.1 1046772..1050164(+) (sbcC) [Bacillus amyloliquefaciens strain bm]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKQAEQQFHEANERLEAAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRYTEAVRRKQRAEQEHELAKRKSEAE
TVSFTRQNEAYEAWRAHKAEREPKLVKEEELYQRLSAIEQKLLEAKKEAEKTNAEHSKKEEEYEAASKQLAAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKNMEKLNGESESLTAKAKTEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEQLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISAHQQTVRQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEVCGDIPPNRIDAWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLEAVRQELQL
LKSKEQSLFDALKQAQQSLNDAKGRESGSLMSLRDAETSLEKAQNDWRVRSKDTGFTDPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLAERRISEEEWTASVSLLKQAEAESGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=547101 LQT99_RS05390 WP_032874396.1 1046772..1050164(+) (sbcC) [Bacillus amyloliquefaciens strain bm]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCAGG
AGCCGGGGTGTTCGGGATTTTCGGGCCGACCGGAAGCGGAAAATCGTCGATCCTTGATGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATCCTGAATCATGCCGAAGATCAGCTCGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGCCTGATTGAAATCAAAGATGAACAAACGGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGCGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCCGAACAATCCGGCCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCAGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGCAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGTTTTGAGAATCACCAGGAAATTTGGAACCTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCTGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGCTACACAGAAGCCGTCCGCCGGAAGCAGCGCGCCGAACAGGAACACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTTCATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGGGCCCATAAGGCCGAACGGGAGCCGAAGCTTGTCAA
GGAAGAAGAGCTGTATCAAAGACTTTCAGCCATTGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAACACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGGCCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCCGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCGGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAACGGGCCAATCTGACAACGCAGCTGAAAA
ACATGGAGAAGCTGAACGGAGAAAGCGAGTCGCTCACAGCGAAAGCGAAAACGGAAGAGGAAGACATTACGCGCGCTTAT
CAAACGCTTCAAACCGTTTACCATATGGTCTGTGAAACGGAGCGTTCACTGAAAGCCGCAGCCGAACGGGCTGACAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTGATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCGACGCAGCATGACCGCCCGCGTTCCGCTCATGAAACATTCTCGCCTGATACAGCT
GTACAGGAACAGTTGCAGCAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAACAGTCGGGGCGTTTTACCGAAGAATGCCCGTTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTCCTCCATCAGCGGACGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCTTGGAATGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACAAGACTGATCAGCGCGCATCAGCAGACGGTGAGACAAGCTGAGCAGCTTGCCGAACG
AATCCGCTACGAGGAAAAAGAAGCCGACCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAACGAAGTCTGCGGTGATATTCCGCCAAACCGGATTGACGCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCTGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCAATTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCGAAAGAACAGTCCCTATTCGACGCGCTGAAGCAGGCGCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
AGGGAGTCTCATGTCACTCAGGGATGCTGAGACCTCCCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCAAAAGACA
CCGGGTTTACCGACCCGGACCAAGTCAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTCCTGGACACTTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGAGCGCCGGATATCGGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTCAGGCGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGCGTAGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGACGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.513

100

0.645