Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   H020_RS0109280 Genome accession   NZ_AKVY01000001
Coordinates   1776446..1777405 (+) Length   319 a.a.
NCBI ID   WP_000777235.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1771446..1782405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0109250 - 1771646..1772410 (-) 765 WP_000082885.1 ester cyclase -
  H020_RS0109255 - 1772414..1772857 (-) 444 WP_000651443.1 MarR family winged helix-turn-helix transcriptional regulator -
  H020_RS0109260 - 1773539..1773835 (-) 297 WP_000230150.1 bacteriocin immunity protein -
  H020_RS0109265 pepA 1773857..1774921 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  H020_RS0109270 galE 1775322..1776023 (+) 702 WP_000167851.1 UDP-glucose 4-epimerase GalE -
  H020_RS14700 - 1776039..1776149 (+) 111 WP_001108391.1 hypothetical protein -
  H020_RS0109280 ceuB 1776446..1777405 (+) 960 WP_000777235.1 ABC transporter permease Machinery gene
  H020_RS0109285 - 1777395..1778351 (+) 957 WP_001193674.1 iron chelate uptake ABC transporter family permease subunit -
  H020_RS0109290 - 1778348..1779100 (+) 753 WP_000764303.1 ABC transporter ATP-binding protein -
  H020_RS0109295 - 1779196..1780161 (+) 966 WP_000858264.1 siderophore ABC transporter substrate-binding protein -
  H020_RS0109300 yidD 1780386..1780628 (-) 243 WP_000821641.1 membrane protein insertion efficiency factor YidD -
  H020_RS0109305 - 1780628..1781350 (-) 723 WP_001222228.1 pseudouridine synthase -
  H020_RS0109310 scpB 1781337..1781906 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35427.30 Da        Isoelectric Point: 9.7466

>NTDB_id=54710 H020_RS0109280 WP_000777235.1 1776446..1777405(+) (ceuB) [Streptococcus pneumoniae TIGR4]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTHKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=54710 H020_RS0109280 WP_000777235.1 1776446..1777405(+) (ceuB) [Streptococcus pneumoniae TIGR4]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCACAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364

Multiple sequence alignment