Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LQT99_RS03920 Genome accession   NZ_CP088005
Coordinates   765108..765824 (+) Length   238 a.a.
NCBI ID   WP_032872305.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain bm     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 760108..770824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS03890 (LQT99_03880) - 760288..760665 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  LQT99_RS03895 (LQT99_03885) - 760675..761106 (-) 432 WP_032872295.1 Hsp20/alpha crystallin family protein -
  LQT99_RS03900 (LQT99_03890) - 761122..761364 (-) 243 WP_013351373.1 spore germination protein -
  LQT99_RS03905 (LQT99_03895) - 761379..761639 (-) 261 WP_032872298.1 spore germination protein -
  LQT99_RS03910 (LQT99_03900) treP 761910..763325 (+) 1416 WP_032872301.1 PTS system trehalose-specific EIIBC component -
  LQT99_RS03915 (LQT99_03905) treC 763401..765086 (+) 1686 WP_032872303.1 alpha,alpha-phosphotrehalase -
  LQT99_RS03920 (LQT99_03910) treR 765108..765824 (+) 717 WP_032872305.1 trehalose operon repressor Regulator
  LQT99_RS03925 (LQT99_03915) - 765958..766623 (+) 666 WP_029974056.1 NAD(P)H-dependent oxidoreductase -
  LQT99_RS03930 (LQT99_03920) - 766659..767420 (-) 762 WP_007408500.1 YibE/F family protein -
  LQT99_RS03935 (LQT99_03925) - 767417..768556 (-) 1140 WP_032872307.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27415.39 Da        Isoelectric Point: 6.9757

>NTDB_id=547086 LQT99_RS03920 WP_032872305.1 765108..765824(+) (treR) [Bacillus amyloliquefaciens strain bm]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNSVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=547086 LQT99_RS03920 WP_032872305.1 765108..765824(+) (treR) [Bacillus amyloliquefaciens strain bm]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACACGTGCCTCTATTGACAAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTTGGCGGATTCAGCCATATGGCGGTCGTGAAAAACAGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424