Detailed information NTG0547082

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LQT99_RS02310
• Genome accession: NZ_CP088005
• Coordinates: 457843..458973 (+)
• Length: 376 a.a.
• NCBI ID: WP_032872953.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain bm
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 452843..463973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQT99_RS02285 (LQT99_02290)	-	453176..453620 (+)	445	Protein_411	NUDIX hydrolase	-
LQT99_RS02290 (LQT99_02295)	-	453678..455399 (+)	1722	WP_014304370.1	pyruvate oxidase	-
LQT99_RS02295	-	455628..456073 (+)	446	Protein_413	peptidoglycan-binding protein	-
LQT99_RS02300 (LQT99_02310)	-	456109..456666 (-)	558	WP_032872951.1	hypothetical protein	-
LQT99_RS02305 (LQT99_02315)	-	456730..457179 (-)	450	WP_049589365.1	hypothetical protein	-
LQT99_RS02310 (LQT99_02320)	rapC	457843..458973 (+)	1131	WP_032872953.1	Rap family tetratricopeptide repeat protein	Regulator
LQT99_RS02315	-	458973..459107 (+)	135	WP_255322095.1	hypothetical protein	-
LQT99_RS02320 (LQT99_02325)	-	459500..459730 (-)	231	WP_032872955.1	hypothetical protein	-
LQT99_RS02325	-	459918..460097 (-)	180	WP_032872957.1	hypothetical protein	-
LQT99_RS02330 (LQT99_02330)	-	460111..460668 (-)	558	WP_032872960.1	hypothetical protein	-
LQT99_RS02335 (LQT99_02335)	-	460764..461342 (-)	579	WP_171006740.1	hypothetical protein	-
LQT99_RS02340 (LQT99_02340)	-	461566..461832 (-)	267	WP_007609521.1	hypothetical protein	-
LQT99_RS02345 (LQT99_02345)	-	461938..463215 (-)	1278	WP_087920751.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44582.00 Da
• Isoelectric Point: 5.5572

>NTDB_id=547082 LQT99_RS02310 WP_032872953.1 457843..458973(+) (rapC) [Bacillus amyloliquefaciens strain bm]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEGKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=547082 LQT99_RS02310 WP_032872953.1 457843..458973(+) (rapC) [Bacillus amyloliquefaciens strain bm]
ATGGATCAAGTTTTGCCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTCTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTGGCTAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGCTACTTAGAAGGGAAACGCCTTTGGTCTGATTTCGCAGAGCTGACTGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACACGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372