Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   J1N58_RS11700 Genome accession   NZ_CP071697
Coordinates   2439861..2440625 (+) Length   254 a.a.
NCBI ID   WP_099778999.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2434123..2439739 2439861..2440625 flank 122


Gene organization within MGE regions


Location: 2434123..2440625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS11670 (J1N58_11670) - 2434123..2435286 (+) 1164 WP_100881157.1 IS30 family transposase -
  J1N58_RS11680 (J1N58_11680) - 2435671..2436354 (-) 684 WP_024393106.1 YoaK family protein -
  J1N58_RS11685 (J1N58_11685) rlmH 2436379..2436858 (-) 480 WP_044764447.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  J1N58_RS11690 (J1N58_11690) htrA 2437032..2438228 (+) 1197 WP_043024644.1 trypsin-like peptidase domain-containing protein Regulator
  J1N58_RS11695 (J1N58_11695) - 2438363..2439849 (+) 1487 Protein_2277 IS1182 family transposase -
  J1N58_RS11700 (J1N58_11700) spo0J 2439861..2440625 (+) 765 WP_099778999.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28961.19 Da        Isoelectric Point: 8.3913

>NTDB_id=547073 J1N58_RS11700 WP_099778999.1 2439861..2440625(+) (spo0J) [Streptococcus suis strain 1112S]
MEELRTLDISEIHPNPYQPRIHFDEKELLELAQSIRENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGQISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=547073 J1N58_RS11700 WP_099778999.1 2439861..2440625(+) (spo0J) [Streptococcus suis strain 1112S]
ATGGAAGAATTACGTACACTAGATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAGGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATAGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGACAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAACTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTAAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.331

100

0.543