Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   J1N58_RS10735 Genome accession   NZ_CP071697
Coordinates   2255047..2256414 (-) Length   455 a.a.
NCBI ID   WP_002939963.1    Uniprot ID   A0AA87FAH0
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250047..2261414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS10715 (J1N58_10715) - 2250705..2251565 (-) 861 WP_099870426.1 class C sortase -
  J1N58_RS10720 (J1N58_10720) - 2251543..2252454 (-) 912 WP_105096536.1 class C sortase -
  J1N58_RS10725 (J1N58_10725) - 2253141..2253899 (-) 759 WP_013730631.1 TIGR00266 family protein -
  J1N58_RS10730 (J1N58_10730) - 2254171..2254661 (-) 491 Protein_2091 carbonic anhydrase -
  J1N58_RS10735 (J1N58_10735) radA 2255047..2256414 (-) 1368 WP_002939963.1 DNA repair protein RadA Machinery gene
  J1N58_RS10740 (J1N58_10740) - 2256421..2256954 (-) 534 WP_002939962.1 histidine phosphatase family protein -
  J1N58_RS10745 (J1N58_10745) - 2256961..2257404 (-) 444 WP_002939955.1 dUTP diphosphatase -
  J1N58_RS10750 (J1N58_10750) - 2257921..2258787 (-) 867 WP_002939952.1 helix-turn-helix transcriptional regulator -
  J1N58_RS10755 (J1N58_10755) - 2259125..2259694 (+) 570 WP_002939948.1 hypothetical protein -
  J1N58_RS10760 (J1N58_10760) - 2259903..2260091 (+) 189 WP_002939946.1 hypothetical protein -
  J1N58_RS11990 - 2260236..2260358 (+) 123 WP_002939945.1 hypothetical protein -
  J1N58_RS10765 (J1N58_10765) - 2260613..2260972 (-) 360 WP_024377771.1 YbaN family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49859.37 Da        Isoelectric Point: 6.5158

>NTDB_id=547070 J1N58_RS10735 WP_002939963.1 2255047..2256414(-) (radA) [Streptococcus suis strain 1112S]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=547070 J1N58_RS10735 WP_002939963.1 2255047..2256414(-) (radA) [Streptococcus suis strain 1112S]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGTGGAGTGGTGCCGGGCAGCCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAGGAATCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAATTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGATTCTATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
ATCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAATATTGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTGGACACCGTTCTTTATTTTGAGGGC
GAGCGTCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGATCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGTCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTAGATGAGCCAGCTATTGACCTGGCAGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTAGGCTTTACTAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGAATCAAGGTACCAAAGGAAATCACGGTTGTCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TTAAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622