Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   J1N58_RS09845 Genome accession   NZ_CP071697
Coordinates   2061398..2063188 (-) Length   596 a.a.
NCBI ID   WP_024376440.1    Uniprot ID   A0A116KLM4
Organism   Streptococcus suis strain 1112S     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2056398..2068188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS09825 (J1N58_09825) - 2057204..2058106 (-) 903 WP_002942329.1 ABC transporter permease -
  J1N58_RS09830 (J1N58_09830) opp4B 2058120..2059076 (-) 957 WP_002942327.1 oligopeptide ABC transporter permease -
  J1N58_RS09835 (J1N58_09835) - 2059078..2060019 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  J1N58_RS09840 (J1N58_09840) - 2060022..2061020 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  J1N58_RS09845 (J1N58_09845) oppA 2061398..2063188 (-) 1791 WP_024376440.1 oligopeptide ABC transporter substrate-binding protein Regulator
  J1N58_RS09850 (J1N58_09850) pbp3 2063403..2064644 (+) 1242 WP_024376441.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  J1N58_RS09855 (J1N58_09855) sufB 2065193..2066608 (-) 1416 WP_024379508.1 Fe-S cluster assembly protein SufB -
  J1N58_RS09860 (J1N58_09860) sufU 2066915..2067355 (-) 441 WP_105096264.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65666.42 Da        Isoelectric Point: 4.4760

>NTDB_id=547066 J1N58_RS09845 WP_024376440.1 2061398..2063188(-) (oppA) [Streptococcus suis strain 1112S]
MKKTTKLFALAGISLLSTAVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IVGMDEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASEKGIAFENIELTADKGVAAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=547066 J1N58_RS09845 WP_024376440.1 2061398..2063188(-) (oppA) [Streptococcus suis strain 1112S]
ATGAAAAAGACAACAAAACTCTTTGCTTTAGCAGGAATTTCTCTGCTGTCGACAGCAGTTCTTGCTGCTTGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAACACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTACAA
TCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGACGATAAATTCTTGAAC
ATTGTGGGTATGGATGAATTTGTTGCTGGAACAGCTTCAGATATCTCAGGTCTTAAGAAAATTGATGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCCGGTGGTGATGTACCTGCCTATATCCAACCAGAACATATCT
ATAAAGACATCCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTATGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGACATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACGGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACAGCA
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGAAAAAGGTATCGCTTTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGCGGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116KLM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.953

100

0.93