Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   J1N58_RS08950 Genome accession   NZ_CP071697
Coordinates   1875842..1877617 (-) Length   591 a.a.
NCBI ID   WP_161944100.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870842..1882617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS08930 (J1N58_08930) - 1871045..1872844 (+) 1800 WP_002942786.1 acyltransferase family protein -
  J1N58_RS08935 (J1N58_08935) - 1873228..1873881 (-) 654 WP_029176243.1 phosphatase PAP2 family protein -
  J1N58_RS08940 (J1N58_08940) - 1873906..1874463 (-) 558 WP_029175876.1 ECF transporter S component -
  J1N58_RS08945 (J1N58_08945) - 1874909..1875454 (-) 546 WP_029176242.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  J1N58_RS08950 (J1N58_08950) oppA 1875842..1877617 (-) 1776 WP_161944100.1 oligopeptide ABC transporter substrate-binding protein Regulator
  J1N58_RS08955 (J1N58_08955) yidD 1878223..1878462 (-) 240 WP_105096668.1 membrane protein insertion efficiency factor YidD -
  J1N58_RS08960 (J1N58_08960) - 1878462..1879193 (-) 732 WP_029185420.1 pseudouridine synthase -
  J1N58_RS08965 (J1N58_08965) scpB 1879183..1879752 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  J1N58_RS08970 (J1N58_08970) - 1879736..1880455 (-) 720 WP_105130988.1 segregation/condensation protein A -
  J1N58_RS08975 (J1N58_08975) xerD 1880455..1881186 (-) 732 WP_024375834.1 site-specific tyrosine recombinase XerD -
  J1N58_RS08980 (J1N58_08980) cbpB 1881183..1881641 (-) 459 WP_024378617.1 cyclic-di-AMP-binding protein CbpB -
  J1N58_RS08985 (J1N58_08985) - 1881638..1882165 (-) 528 WP_024378616.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65382.11 Da        Isoelectric Point: 4.2794

>NTDB_id=547063 J1N58_RS08950 WP_161944100.1 1875842..1877617(-) (oppA) [Streptococcus suis strain 1112S]
MKRMKNIALIGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTDPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLD
EAGYKDVDGDGMREDADGKSLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=547063 J1N58_RS08950 WP_161944100.1 1875842..1877617(-) (oppA) [Streptococcus suis strain 1112S]
ATGAAAAGAATGAAAAACATCGCTTTGATTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGTGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCACCTTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GGAATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGGACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTTACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAAGAAGGTTGATGACTATACGGTAGTCCTCTC
GGTAAAAGATATGTCTCCATCCATGATGTATGCTGGTGGGGGTGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCGATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATAACCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAATCGCTTACTATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACTATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCAGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.993

100

0.663