Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LOK81_RS05030 | Genome accession | NZ_CP087992 |
| Coordinates | 1148877..1150070 (+) | Length | 397 a.a. |
| NCBI ID | WP_004085429.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain CFBP8433 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1143877..1155070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOK81_RS05010 (LOK81_04960) | - | 1144063..1145265 (-) | 1203 | WP_004085433.1 | anthranilate synthase component I family protein | - |
| LOK81_RS05015 (LOK81_04965) | - | 1145900..1146706 (+) | 807 | WP_004085432.1 | TatD family hydrolase | - |
| LOK81_RS05020 (LOK81_04970) | - | 1146902..1147516 (-) | 615 | WP_004085431.1 | HNH endonuclease | - |
| LOK81_RS05025 (LOK81_04975) | - | 1147832..1148305 (-) | 474 | WP_004085430.1 | LEA type 2 family protein | - |
| LOK81_RS05030 (LOK81_04980) | pilA | 1148877..1150070 (+) | 1194 | WP_004085429.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| LOK81_RS05035 (LOK81_04985) | mutY | 1150170..1151219 (+) | 1050 | WP_004085428.1 | A/G-specific adenine glycosylase | - |
| LOK81_RS05040 (LOK81_04990) | - | 1151254..1151526 (+) | 273 | WP_011097829.1 | oxidative damage protection protein | - |
| LOK81_RS05045 (LOK81_04995) | - | 1151580..1152113 (+) | 534 | WP_228762585.1 | DUF2726 domain-containing protein | - |
| LOK81_RS05050 (LOK81_05000) | - | 1152243..1152977 (+) | 735 | WP_004085427.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LOK81_RS05055 (LOK81_05005) | ruvC | 1153087..1153608 (+) | 522 | WP_027700721.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LOK81_RS05060 (LOK81_05010) | ruvA | 1153694..1154278 (+) | 585 | WP_004085425.1 | Holliday junction branch migration protein RuvA | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 42764.87 Da Isoelectric Point: 6.7732
>NTDB_id=546964 LOK81_RS05030 WP_004085429.1 1148877..1150070(+) (pilA) [Xylella fastidiosa subsp. multiplex strain CFBP8433]
MLSFLRLKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQEQTSTTPLLSSADQPALLTHSTSSAFTELAISTGDDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
MLSFLRLKKPTNAISDNERSKYSAEEMAAAFPKAPSLDEAPDQEQTSTTPLLSSADQPALLTHSTSSAFTELAISTGDDT
SGASTPTVSVDKPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRMKAREFADIQ
TLLAALRNELITILRPVSKPLIVKRDALPFVFLVVGVNGVGKTTTIGKLAKWFKRDGYSLMLAAGDTFRAAAVAQLQAWG
ERNSITVIAQKGPNADAASVVYDALQAAKARSTEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTT
GQNALSQLRQFHAAVNVTGLVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLPKTLGNA
Nucleotide
Download Length: 1194 bp
>NTDB_id=546964 LOK81_RS05030 WP_004085429.1 1148877..1150070(+) (pilA) [Xylella fastidiosa subsp. multiplex strain CFBP8433]
ATGTTAAGCTTTCTACGCCTCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCGGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGAGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGCAATCTCCACTGGCGACGACACA
TCGGGGGCGAGTACCCCAACTGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCCATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACCACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCACCGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAGATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTCTTGTGGTAACCAAGCTCGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
ATGTTAAGCTTTCTACGCCTCAAGAAGCCCACCAATGCCATCAGCGACAACGAGCGGAGCAAATACAGTGCTGAAGAGAT
GGCGGCTGCCTTTCCAAAAGCTCCTTCGTTGGATGAGGCTCCAGACCAAGAGCAAACTAGCACCACGCCATTGCTATCTT
CAGCAGATCAGCCTGCGTTACTGACCCACTCTACGAGTAGTGCCTTTACAGAGCTAGCAATCTCCACTGGCGACGACACA
TCGGGGGCGAGTACCCCAACTGTTTCGGTGGATAAACCCAATTGGCGTGAGCGCCTACGTGGCAGTCTCTTCGCGCGGAA
CATCAATGCTTTATTCTCGAATAACCCGCGTTTGGATGAAAATCTGCTTGATGAGATTGAAACCGCGTTGATTACGGCTG
ATGTAGGCGTGTCTACGACTAATGCCATAGTTGACGGTTTGCGTAAACGTATGAAAGCACGTGAATTCGCTGATATCCAA
ACACTGTTAGCTGCATTACGTAATGAATTAATCACGATACTGCGTCCTGTTTCTAAACCACTGATCGTCAAACGCGATGC
ACTTCCATTTGTGTTTCTTGTTGTAGGTGTCAATGGTGTTGGTAAGACCACAACAATCGGCAAGTTGGCGAAGTGGTTCA
AGAGGGATGGCTACAGCTTGATGTTGGCTGCCGGTGATACCTTCCGTGCTGCCGCTGTCGCGCAGTTACAGGCATGGGGC
GAGCGTAATAGTATTACGGTGATCGCACAAAAAGGACCGAATGCAGATGCTGCTTCGGTAGTCTATGATGCGCTGCAAGC
AGCCAAGGCGCGTAGCACCGAGGTGCTCATCGCCGATACCGCAGGCCGCCTGCATACCCAGATTGGTTTAATGAACGAGT
TGAGCAAAATCCGCCGTGTGCTCGGTAAGCTTGATAGCACCGCACCACATGAAGTACTGATGGTGATTGACGGTACTACT
GGGCAAAATGCGCTTTCGCAATTACGCCAATTTCATGCTGCCGTGAACGTCACTGGTCTTGTGGTAACCAAGCTCGATGG
CACTGCCAAGGGCGGGGTAGTCTTCACGTTGGCACGTGAATTTGGCATTCCAATCCACTTCATCAGCATAGGCGAGCAGC
TGGAAGATATGCATTTTTTTGACCCTGAGGCATTCGTAGACGCGCTACTGCCAAAAACATTAGGAAATGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
42.297 |
89.924 |
0.38 |