Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SYN6312_RS11015 Genome accession   NC_019680
Coordinates   2249769..2251145 (+) Length   458 a.a.
NCBI ID   WP_015124958.1    Uniprot ID   K9RU14
Organism   Synechococcus sp. PCC 6312     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2244769..2256145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYN6312_RS10970 (Syn6312_2291) atpH 2244813..2245367 (-) 555 WP_015124949.1 ATP synthase F1 subunit delta -
  SYN6312_RS10975 (Syn6312_2292) - 2245368..2245898 (-) 531 WP_015124950.1 F0F1 ATP synthase subunit B -
  SYN6312_RS10980 (Syn6312_2293) - 2245912..2246343 (-) 432 WP_015124951.1 F0F1 ATP synthase subunit B' -
  SYN6312_RS10985 (Syn6312_2294) atpE 2246436..2246684 (-) 249 WP_015124952.1 ATP synthase F0 subunit C -
  SYN6312_RS10990 (Syn6312_2295) atpB 2246805..2247566 (-) 762 WP_015124953.1 F0F1 ATP synthase subunit A -
  SYN6312_RS10995 (Syn6312_2296) - 2247608..2248063 (-) 456 WP_015124954.1 ATP synthase I subunit -
  SYN6312_RS11000 (Syn6312_2297) - 2248174..2248506 (-) 333 WP_015124955.1 DUF565 domain-containing protein -
  SYN6312_RS11005 (Syn6312_2298) cutA 2248522..2248848 (-) 327 WP_015124956.1 divalent-cation tolerance protein CutA -
  SYN6312_RS11010 (Syn6312_2299) rpaB 2248873..2249616 (-) 744 WP_041430829.1 response regulator transcription factor RpaB -
  SYN6312_RS11015 (Syn6312_2300) radA 2249769..2251145 (+) 1377 WP_015124958.1 DNA repair protein RadA Machinery gene
  SYN6312_RS11020 (Syn6312_2301) - 2251279..2251632 (-) 354 WP_015124959.1 type II toxin-antitoxin system VapC family toxin -
  SYN6312_RS11025 (Syn6312_2302) - 2251732..2252016 (-) 285 WP_015124960.1 hypothetical protein -
  SYN6312_RS11030 (Syn6312_2303) - 2252082..2252819 (-) 738 WP_041431452.1 amino acid ABC transporter ATP-binding protein -
  SYN6312_RS11035 (Syn6312_2304) pheT 2253086..2255662 (+) 2577 WP_015124962.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49370.69 Da        Isoelectric Point: 6.3652

>NTDB_id=54692 SYN6312_RS11015 WP_015124958.1 2249769..2251145(+) (radA) [Synechococcus sp. PCC 6312]
MPRPRTQFICRECGAEYAQYFGRCSNCEQWNTLDEQVVPSVSRTPGTSSKSRKASSSQALSLEQITDAPEFRFSSGFEEL
DRVLGGGVVPGSLVLVGGDPGIGKSTLLLQAAFHWQQRYSVLYVCAEESGQQVKLRAKRISTAVSDKLLLLPENDLDIIL
TELEQIHPTVAVIDSIQAIYLPTLTAAPGSVSQVRECTAALMRLAKKQNISLFIVGHVTKEGAIAGPKVLEHLVDTVLYF
EGERFASHRLLRAVKNRFGASQEIGVFRMVEQGLEEVSNPSALFLGEADATPGTATIVACEGTRPLVVELQSLVSPTSYP
SPRRSTTGIEYNRFLQILAVLEKRLGIPLSKLDAYVSSSGGLGVTEPAADLGIAVAVVASFRDRLVTAQTVLIGEVGLGG
QVRSVSQLEIRLKEALKLGFKRAIIPKTQALEFPGLEVIPVARVADALVAGLSSQEDQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=54692 SYN6312_RS11015 WP_015124958.1 2249769..2251145(+) (radA) [Synechococcus sp. PCC 6312]
ATGCCCAGGCCCCGCACCCAATTTATTTGCCGTGAATGTGGAGCCGAATATGCCCAGTATTTTGGTCGCTGTAGTAATTG
TGAGCAGTGGAATACTTTAGACGAACAGGTAGTCCCTAGCGTTAGCCGCACTCCCGGAACCAGCAGTAAATCCCGCAAAG
CCAGTTCATCCCAAGCCCTGAGTTTAGAGCAAATCACCGATGCCCCAGAATTTCGCTTTAGTTCTGGCTTTGAGGAATTA
GATCGGGTCTTGGGGGGTGGGGTTGTCCCTGGTTCCTTAGTATTAGTCGGCGGTGATCCAGGCATTGGCAAATCCACTCT
CCTCCTCCAGGCCGCGTTTCATTGGCAGCAACGGTATTCGGTTTTATATGTTTGTGCAGAAGAGTCGGGACAGCAAGTAA
AGTTACGGGCAAAACGGATCAGTACAGCCGTCAGCGATAAACTTTTATTGTTACCGGAAAATGATCTCGATATTATCCTA
ACGGAACTGGAGCAAATTCATCCCACGGTAGCGGTAATTGACAGTATCCAGGCCATTTATTTACCCACATTGACGGCAGC
TCCCGGCTCGGTATCTCAAGTGCGCGAATGTACAGCTGCCTTGATGCGATTGGCCAAAAAACAAAATATTAGTTTATTTA
TTGTCGGTCATGTCACTAAAGAAGGGGCTATTGCCGGGCCCAAAGTCTTAGAACATTTGGTAGATACGGTTTTATACTTT
GAGGGAGAACGGTTTGCCAGTCATCGGCTCTTGCGGGCGGTCAAAAATCGCTTTGGGGCCAGTCAGGAAATTGGCGTGTT
TCGGATGGTGGAGCAGGGCTTAGAAGAAGTCAGTAATCCCTCGGCCTTGTTTTTAGGAGAAGCCGATGCCACCCCGGGAA
CTGCAACCATCGTCGCCTGCGAAGGAACCCGCCCCCTAGTGGTGGAATTACAAAGCCTTGTGAGTCCGACCAGTTACCCC
TCCCCCAGACGCTCCACTACGGGCATTGAATACAATCGGTTTTTACAAATTTTGGCAGTTCTGGAAAAACGCCTAGGGAT
TCCCCTCTCAAAATTAGATGCCTATGTCTCGTCTTCGGGGGGCCTGGGGGTGACAGAACCAGCGGCAGACCTAGGAATTG
CAGTGGCAGTGGTGGCCAGTTTTCGGGATCGCTTGGTGACAGCCCAGACGGTTTTGATTGGCGAGGTGGGTTTAGGGGGG
CAAGTGCGCTCTGTTTCTCAGTTGGAAATACGCTTAAAGGAAGCTCTCAAATTGGGATTCAAGCGGGCAATTATTCCCAA
GACTCAAGCCTTAGAGTTTCCAGGCCTGGAGGTGATTCCTGTCGCCAGAGTTGCAGATGCTTTAGTCGCTGGTCTGAGCA
GCCAGGAAGATCAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9RU14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.353

100

0.5
  radA Streptococcus pneumoniae Rx1

47.345

98.69

0.467
  radA Streptococcus pneumoniae D39

47.345

98.69

0.467
  radA Streptococcus pneumoniae R6

47.345

98.69

0.467
  radA Streptococcus pneumoniae TIGR4

47.345

98.69

0.467
  radA Streptococcus mitis NCTC 12261

48.951

93.668

0.459
  radA Streptococcus mitis SK321

48.718

93.668

0.456

Multiple sequence alignment