Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   J3Q26_RS17030 Genome accession   NZ_CP071603
Coordinates   3547743..3549179 (-) Length   478 a.a.
NCBI ID   WP_207606968.1    Uniprot ID   -
Organism   Bordetella holmesii strain CIDM-BH3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3542743..3554179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q26_RS17005 (J3Q26_17005) gabD 3542855..3544297 (+) 1443 WP_005017489.1 NADP-dependent succinate-semialdehyde dehydrogenase -
  J3Q26_RS17010 (J3Q26_17010) - 3544465..3545361 (+) 897 WP_005017487.1 transporter -
  J3Q26_RS17015 (J3Q26_17015) bfr 3545484..3545960 (-) 477 WP_005017484.1 bacterioferritin -
  J3Q26_RS17020 (J3Q26_17020) - 3546274..3547182 (-) 909 WP_005017483.1 DMT family transporter -
  J3Q26_RS17025 (J3Q26_17025) - 3547318..3547596 (-) 279 WP_005017481.1 (2Fe-2S)-binding protein -
  J3Q26_RS17030 (J3Q26_17030) rpoN/rpoN1 3547743..3549179 (-) 1437 WP_207606968.1 RNA polymerase factor sigma-54 Machinery gene
  J3Q26_RS17035 (J3Q26_17035) - 3549178..3549900 (+) 723 WP_005017476.1 hypothetical protein -
  J3Q26_RS17040 (J3Q26_17040) leuA 3550271..3551980 (+) 1710 WP_005017473.1 2-isopropylmalate synthase -
  J3Q26_RS17045 (J3Q26_17045) - 3552044..3553333 (-) 1290 WP_005017470.1 amidase -
  J3Q26_RS17050 (J3Q26_17050) - 3553773..3554090 (-) 318 WP_005017468.1 hypothetical protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 52492.85 Da        Isoelectric Point: 5.0672

>NTDB_id=546887 J3Q26_RS17030 WP_207606968.1 3547743..3549179(-) (rpoN/rpoN1) [Bordetella holmesii strain CIDM-BH3]
MQNIVPMSRPALELRPGQHLTLTPQLQQSIRLLQLSSLDLEAEISQALAENPLLERDETPAEQIDSDPQREASLDTADSV
TDTEIRFDDIPGSGGVYPDEDSDSPARSDTLREHLLQQLALTRAGVRDAALAALLIDELDDNGYLGSPLSEILQWLPAEL
EVDEDELRAALSLVQSFDPTGIGARDMAECLLLQLRHPDVARLPEAASPAVLGCARELCGQHLALLATGNPARLREMLRV
DEATLRAARALIVRLEPRPGRAWTVPAAEYAVPDVLVRKTRQGWQAVLNSAVMPRLQVNGLYAQMLSNQREAAYAGLNAQ
LQQARWMIRNVEQRFDTILRVAQAIVAHRAEFFTRGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTMELKRF
FGTGVAMDSGDSASATAVQEHIRQMVADENRAKPLSDSQIMERLAGQGIVIARRTVAKYREALRIAPAAVRKAQAAAR

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=546887 J3Q26_RS17030 WP_207606968.1 3547743..3549179(-) (rpoN/rpoN1) [Bordetella holmesii strain CIDM-BH3]
ATGCAAAATATTGTACCTATGAGTCGTCCCGCCTTAGAACTTCGGCCTGGTCAGCATTTGACCCTGACCCCGCAACTGCA
ACAGTCCATCCGGCTGCTGCAGCTGTCTTCGCTGGATCTTGAGGCCGAAATCTCTCAAGCCCTGGCAGAGAATCCGTTGC
TCGAACGCGACGAAACGCCGGCCGAGCAGATCGACAGCGATCCGCAGCGCGAAGCCAGTCTCGACACTGCCGATTCGGTG
ACGGACACGGAAATCCGGTTTGACGACATACCGGGTTCGGGCGGCGTATACCCCGATGAGGACAGCGACTCGCCGGCCCG
CAGCGACACTTTGCGCGAGCATCTGTTGCAGCAACTGGCGCTGACCCGCGCCGGTGTGCGCGACGCCGCGCTGGCCGCAT
TGCTCATCGACGAGCTGGACGATAACGGCTATCTCGGTTCGCCGCTGAGTGAAATCCTGCAATGGCTGCCCGCCGAGCTC
GAGGTCGATGAGGATGAGCTGCGTGCGGCGCTGAGCTTGGTGCAGTCCTTCGACCCAACCGGCATCGGTGCGCGCGACAT
GGCCGAGTGCTTGCTGTTGCAATTGCGCCATCCTGACGTCGCGCGGCTGCCCGAAGCCGCATCGCCCGCCGTGCTGGGGT
GCGCGCGCGAACTCTGTGGCCAGCATCTGGCGCTGCTGGCCACCGGTAATCCGGCGCGCCTGCGGGAGATGCTGCGCGTC
GATGAGGCCACGCTGCGCGCCGCGCGGGCGCTGATCGTTCGGCTCGAGCCCCGGCCGGGCCGGGCCTGGACGGTGCCTGC
GGCGGAGTACGCCGTGCCCGATGTGCTGGTGCGCAAAACGCGGCAAGGCTGGCAGGCGGTGCTCAATAGCGCGGTGATGC
CGCGCCTGCAGGTCAACGGCCTGTACGCGCAAATGCTGTCCAATCAGCGCGAGGCTGCCTATGCCGGGCTGAATGCCCAG
CTTCAGCAGGCGCGCTGGATGATCCGCAATGTCGAACAGCGCTTCGACACCATTTTGCGCGTCGCGCAGGCCATCGTCGC
GCACCGGGCCGAGTTCTTCACCCGTGGCCCGGCGGCGATGCGGCCGCTCATTCTCAAAGACATCGCGGGCGAGCTCGGGC
TGCACGAGTCGACGATCTCGCGGGCCACCACGCAGAAGTACATGCTCACTCCGTTTGGGACCATGGAGCTCAAACGATTT
TTCGGCACGGGCGTGGCCATGGACAGCGGTGATTCGGCCTCGGCGACGGCCGTTCAGGAGCACATCCGGCAGATGGTGGC
CGACGAAAACCGTGCCAAGCCGCTTTCGGATAGCCAAATCATGGAGCGCCTGGCCGGTCAGGGCATCGTCATTGCCCGCC
GCACCGTGGCCAAATACCGCGAGGCCTTGCGCATTGCCCCGGCCGCCGTGCGCAAGGCCCAGGCCGCCGCGCGCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(106-302)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-472)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.419

100

0.513