Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LP473_RS00305 Genome accession   NZ_CP087699
Coordinates   52984..53739 (+) Length   251 a.a.
NCBI ID   WP_003132217.1    Uniprot ID   Q9CJD9
Organism   Lactococcus lactis subsp. lactis strain IBB417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 47984..58739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LP473_RS00275 (LP473_00275) - 48043..48492 (+) 450 WP_003132211.1 GNAT family N-acetyltransferase -
  LP473_RS00280 (LP473_00280) - 48569..48811 (+) 243 WP_003132213.1 TM2 domain-containing protein -
  LP473_RS00285 (LP473_00285) - 48892..50514 (-) 1623 WP_058221496.1 SulP family inorganic anion transporter -
  LP473_RS00290 (LP473_00290) - 50724..51245 (+) 522 WP_003132215.1 N-acetyltransferase -
  LP473_RS00300 (LP473_00300) - 51710..52885 (+) 1176 WP_252174807.1 pyridoxal phosphate-dependent aminotransferase -
  LP473_RS00305 (LP473_00305) recO 52984..53739 (+) 756 WP_003132217.1 DNA repair protein RecO Machinery gene
  LP473_RS00310 (LP473_00310) - 53791..54672 (+) 882 WP_058221495.1 Rgg/GadR/MutR family transcriptional regulator -
  LP473_RS00315 (LP473_00315) - 54904..56154 (+) 1251 WP_003132219.1 radical SAM protein -
  LP473_RS00320 (LP473_00320) - 56160..57395 (+) 1236 WP_003132221.1 MFS transporter -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28703.89 Da        Isoelectric Point: 5.9537

>NTDB_id=546856 LP473_RS00305 WP_003132217.1 52984..53739(+) (recO) [Lactococcus lactis subsp. lactis strain IBB417]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=546856 LP473_RS00305 WP_003132217.1 52984..53739(+) (recO) [Lactococcus lactis subsp. lactis strain IBB417]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTATATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CJD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534