Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   BKM84_RS05570 Genome accession   NZ_CP071592
Coordinates   1081425..1082384 (+) Length   319 a.a.
NCBI ID   WP_002852903.1    Uniprot ID   A0A5Y6P8U5
Organism   Campylobacter jejuni subsp. jejuni strain GB19     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076425..1087384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM84_RS05545 (BKM84_05545) neuB 1076923..1077963 (+) 1041 WP_002894656.1 N-acetylneuraminate synthase -
  BKM84_RS05550 (BKM84_05550) neuC 1077960..1079078 (+) 1119 WP_002894654.1 UDP-N-acetylglucosamine 2-epimerase -
  BKM84_RS05555 (BKM84_05555) - 1079075..1079740 (+) 666 WP_002894653.1 acylneuraminate cytidylyltransferase family protein -
  BKM84_RS08830 - 1079728..1079922 (+) 195 WP_223209788.1 hypothetical protein -
  BKM84_RS08885 (BKM84_05560) - 1079885..1080559 (+) 675 WP_286011812.1 CatB-related O-acetyltransferase -
  BKM84_RS05565 (BKM84_05565) waaV 1080551..1081366 (-) 816 Protein_1086 glycosyltransferase family 2 protein -
  BKM84_RS05570 (BKM84_05570) waaF 1081425..1082384 (+) 960 WP_002852903.1 lipopolysaccharide heptosyltransferase II Regulator
  BKM84_RS05575 (BKM84_05575) gmhA 1082365..1082925 (-) 561 WP_002852775.1 D-sedoheptulose 7-phosphate isomerase -
  BKM84_RS05580 (BKM84_05580) rfaE1 1082922..1084307 (-) 1386 WP_002894650.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  BKM84_RS05585 (BKM84_05585) rfaD 1084300..1085253 (-) 954 WP_002852832.1 ADP-glyceromanno-heptose 6-epimerase -
  BKM84_RS05590 (BKM84_05590) gmhB 1085254..1085814 (-) 561 WP_002878815.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  BKM84_RS05595 (BKM84_05595) - 1085896..1086198 (+) 303 WP_002852762.1 cytochrome c -
  BKM84_RS05600 (BKM84_05600) ccoS 1086221..1086427 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36766.44 Da        Isoelectric Point: 10.4054

>NTDB_id=546766 BKM84_RS05570 WP_002852903.1 1081425..1082384(+) (waaF) [Campylobacter jejuni subsp. jejuni strain GB19]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKKLGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=546766 BKM84_RS05570 WP_002852903.1 1081425..1082384(+) (waaF) [Campylobacter jejuni subsp. jejuni strain GB19]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACACCATAAAAGAACA
TTTTAAAAATGCTCAGTTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCCCTATCTTTACGCAAAAAACTTGGTAAAATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y6P8U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.984

100

0.95