Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   J3R86_RS08925 Genome accession   NZ_CP071589
Coordinates   1939754..1940470 (+) Length   238 a.a.
NCBI ID   WP_207517001.1    Uniprot ID   -
Organism   Staphylococcus simiae strain 17941E     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934754..1945470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3R86_RS08895 (J3R86_08895) - 1935281..1935907 (+) 627 WP_207516997.1 nitroreductase family protein -
  J3R86_RS08900 (J3R86_08900) - 1936043..1936828 (+) 786 WP_207516998.1 carbon-nitrogen family hydrolase -
  J3R86_RS08905 (J3R86_08905) hld 1937354..1937431 (-) 78 WP_002464791.1 delta-hemolysin -
  J3R86_RS08910 (J3R86_08910) - 1937724..1938290 (+) 567 WP_207518540.1 accessory gene regulator AgrB -
  J3R86_RS08915 (J3R86_08915) - 1938290..1938430 (+) 141 WP_207516999.1 cyclic lactone autoinducer peptide -
  J3R86_RS08920 (J3R86_08920) - 1938452..1939741 (+) 1290 WP_207517000.1 GHKL domain-containing protein -
  J3R86_RS08925 (J3R86_08925) agrA 1939754..1940470 (+) 717 WP_207517001.1 LytTR family DNA-binding domain-containing protein Regulator
  J3R86_RS08930 (J3R86_08930) - 1940912..1941865 (-) 954 WP_207517002.1 carbohydrate kinase -
  J3R86_RS08935 (J3R86_08935) - 1941865..1943346 (-) 1482 WP_207517003.1 sucrose-6-phosphate hydrolase -
  J3R86_RS08940 (J3R86_08940) - 1943494..1944444 (-) 951 WP_207517004.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27893.93 Da        Isoelectric Point: 6.0941

>NTDB_id=546742 J3R86_RS08925 WP_207517001.1 1939754..1940470(+) (agrA) [Staphylococcus simiae strain 17941E]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDDPYEVLEHSKNMTDIGCYFLDIQLASDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLQLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKEISQLDDRFFRCHNSFVVNRRNIDSIDSKERIVYFKNKEHCYASVRNIKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=546742 J3R86_RS08925 WP_207517001.1 1939754..1940470(+) (agrA) [Staphylococcus simiae strain 17941E]
ATGAAAATTTTCATTTGTGAAGATGACCCAAAACAGCGAGAAAATATGGTAACAATTATTAAAAATTACATTATGATAGA
AGAAAAACCAATGGAAATTGCTCTGGCAACTGATGATCCTTATGAAGTACTTGAACATTCTAAAAATATGACAGATATTG
GTTGCTACTTTTTAGATATACAATTAGCCTCTGATATTAACGGTATAAAATTAGGAAGTGAAATACGTAAGCATGATCCC
GTTGGTAATATTATCTTTGTTACTAGTCATAGTGAACTAACTTATCTTACTTTTGTCTATAAAGTGGCTGCAATGGACTT
CATATTTAAAGATGATCCTGCAGAGTTAAAAACAAGAATTATCGATTGTCTTGAAACTGCGCATACTAGATTACAATTAT
TATCTAAAGAAAGTAACGTTGAAACAATCGAACTTAAACGTGGTAGTAATTCTGTTTATGTTCAATATGATGATATTATG
TTCTTTGAATCATCTACGAAATCTCATCGCTTGATTGCACATTTAGATAATCGTCAAATTGAGTTTTATGGTAATTTAAA
AGAAATAAGTCAATTAGATGATCGTTTCTTCCGATGTCATAATAGTTTCGTTGTCAATCGTCGCAACATTGATTCTATTG
ACTCTAAAGAACGTATCGTTTACTTCAAAAATAAAGAACATTGTTATGCTTCAGTACGAAATATAAAAAAAATATAG

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

94.118

100

0.941