Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   J0G10_RS27555 Genome accession   NZ_CP071586
Coordinates   6211323..6211847 (-) Length   174 a.a.
NCBI ID   WP_008081898.1    Uniprot ID   J3IML3
Organism   Pseudomonas germanica strain FIT28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6206323..6216847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0G10_RS27525 (J0G10_27545) - 6206647..6207228 (+) 582 WP_245398062.1 YjfI family protein -
  J0G10_RS27530 (J0G10_27550) - 6207246..6207944 (+) 699 WP_016983574.1 PspA/IM30 family protein -
  J0G10_RS27535 (J0G10_27555) - 6208156..6208806 (+) 651 WP_095048833.1 DUF2491 family protein -
  J0G10_RS27540 (J0G10_27560) - 6208822..6209247 (+) 426 WP_007917221.1 DUF350 domain-containing protein -
  J0G10_RS27545 (J0G10_27565) - 6209265..6209963 (+) 699 WP_220557069.1 DUF1190 domain-containing protein -
  J0G10_RS27550 (J0G10_27570) - 6209966..6211123 (+) 1158 WP_095048835.1 glutathionylspermidine synthase family protein -
  J0G10_RS27555 (J0G10_27575) ssb 6211323..6211847 (-) 525 WP_008081898.1 single-stranded DNA-binding protein Machinery gene
  J0G10_RS27560 (J0G10_27580) - 6211857..6213254 (-) 1398 WP_007950096.1 MFS transporter -
  J0G10_RS27565 (J0G10_27585) uvrA 6213445..6216279 (+) 2835 WP_095048836.1 excinuclease ABC subunit UvrA -
  J0G10_RS27570 (J0G10_27590) bfr 6216346..6216813 (-) 468 WP_007918444.1 bacterioferritin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19242.39 Da        Isoelectric Point: 5.9314

>NTDB_id=546679 J0G10_RS27555 WP_008081898.1 6211323..6211847(-) (ssb) [Pseudomonas germanica strain FIT28]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=546679 J0G10_RS27555 WP_008081898.1 6211323..6211847(-) (ssb) [Pseudomonas germanica strain FIT28]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGTCGGCTCCGGCTC
CTCGCCAGCAGGCTCCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCCCCGGCTCCACAGCAGGCCGCACCGCAA
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489