Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   H020_RS0102890 Genome accession   NZ_AKVY01000001
Coordinates   555499..555765 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae TIGR4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550499..560765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H020_RS0102870 - 550742..551251 (+) 510 WP_000619950.1 GNAT family N-acetyltransferase -
  H020_RS0102875 pheT 551328..553733 (+) 2406 WP_000961511.1 phenylalanine--tRNA ligase subunit beta -
  H020_RS0102880 - 553801..554802 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  H020_RS12525 - 554958..555373 (+) 416 Protein_545 helix-turn-helix domain-containing protein -
  H020_RS0102890 HI0659 555499..555765 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  H020_RS0102895 metE 556026..558275 (+) 2250 WP_000108201.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  H020_RS0102900 metF 558339..559205 (+) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=54661 H020_RS0102890 WP_001808618.1 555499..555765(+) (HI0659) [Streptococcus pneumoniae TIGR4]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=54661 H020_RS0102890 WP_001808618.1 555499..555765(+) (HI0659) [Streptococcus pneumoniae TIGR4]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534