Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J3Q13_RS05490 Genome accession   NZ_CP071583
Coordinates   1083037..1083996 (+) Length   319 a.a.
NCBI ID   WP_002856368.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB60     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1065354..1088039 1083037..1083996 within 0


Gene organization within MGE regions


Location: 1065354..1088039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q13_RS05405 (J3Q13_05405) pglI 1065354..1066283 (-) 930 WP_002856262.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  J3Q13_RS05410 (J3Q13_05410) pglH 1066276..1067355 (-) 1080 WP_002911763.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  J3Q13_RS05415 (J3Q13_05415) pglK 1067352..1069046 (-) 1695 WP_002856016.1 ABC-type lipopolysaccharide transporter PglK -
  J3Q13_RS05420 (J3Q13_05420) galE 1069040..1070026 (-) 987 WP_002856461.1 UDP-glucose 4-epimerase GalE -
  J3Q13_RS05425 (J3Q13_05425) - 1070084..1070878 (-) 795 WP_002856546.1 3'-5' exonuclease -
  J3Q13_RS05430 (J3Q13_05430) waaC 1070944..1071972 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  J3Q13_RS05435 (J3Q13_05435) htrB 1071962..1072849 (+) 888 WP_002855840.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  J3Q13_RS05440 (J3Q13_05440) - 1072846..1074394 (+) 1549 Protein_1062 glycosyltransferase -
  J3Q13_RS05445 (J3Q13_05445) - 1074398..1075567 (+) 1170 WP_002852863.1 glycosyltransferase family 2 protein -
  J3Q13_RS05450 (J3Q13_05450) - 1075637..1076680 (+) 1044 WP_002870498.1 beta-1,4-N-acetylgalactosaminyltransferase -
  J3Q13_RS05455 (J3Q13_05455) - 1076666..1077571 (-) 906 WP_002852740.1 glycosyltransferase family 2 protein -
  J3Q13_RS05460 (J3Q13_05460) - 1077660..1078535 (+) 876 WP_002869021.1 alpha-2,3-sialyltransferase -
  J3Q13_RS05465 (J3Q13_05465) neuB 1078536..1079576 (+) 1041 WP_002870496.1 N-acetylneuraminate synthase -
  J3Q13_RS05470 (J3Q13_05470) neuC 1079573..1080691 (+) 1119 WP_002911676.1 UDP-N-acetylglucosamine 2-epimerase -
  J3Q13_RS05475 (J3Q13_05475) - 1080688..1081353 (+) 666 WP_002855897.1 acylneuraminate cytidylyltransferase family protein -
  J3Q13_RS05480 (J3Q13_05480) - 1081341..1082174 (+) 834 WP_002855772.1 CatB-related O-acetyltransferase -
  J3Q13_RS05485 (J3Q13_05485) waaV 1082166..1082978 (-) 813 WP_002856066.1 glycosyltransferase family 2 protein -
  J3Q13_RS05490 (J3Q13_05490) waaF 1083037..1083996 (+) 960 WP_002856368.1 lipopolysaccharide heptosyltransferase II Regulator
  J3Q13_RS05495 (J3Q13_05495) gmhA 1083977..1084537 (-) 561 WP_002855785.1 D-sedoheptulose 7-phosphate isomerase -
  J3Q13_RS05500 (J3Q13_05500) rfaE1 1084534..1085919 (-) 1386 WP_002856251.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  J3Q13_RS05505 (J3Q13_05505) rfaD 1085912..1086865 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  J3Q13_RS05510 (J3Q13_05510) gmhB 1086866..1087426 (-) 561 WP_002911679.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  J3Q13_RS05515 (J3Q13_05515) - 1087508..1087810 (+) 303 WP_002852762.1 cytochrome c -
  J3Q13_RS05520 (J3Q13_05520) ccoS 1087833..1088039 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36719.17 Da        Isoelectric Point: 10.1941

>NTDB_id=546587 J3Q13_RS05490 WP_002856368.1 1083037..1083996(+) (waaF) [Campylobacter jejuni strain GB60]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=546587 J3Q13_RS05490 WP_002856368.1 1083037..1083996(+) (waaF) [Campylobacter jejuni strain GB60]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.611

100

0.956