Detailed information NTG0546560

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: J3Q12_RS05465
• Genome accession: NZ_CP071582
• Coordinates: 1076081..1077040 (+)
• Length: 319 a.a.
• NCBI ID: WP_002856368.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain GB28
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1071081..1082040

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J3Q12_RS05440 (J3Q12_05440)	neuB	1071580..1072620 (+)	1041	WP_002870496.1	N-acetylneuraminate synthase	-
J3Q12_RS05445 (J3Q12_05445)	neuC	1072617..1073735 (+)	1119	WP_002911676.1	UDP-N-acetylglucosamine 2-epimerase	-
J3Q12_RS05450 (J3Q12_05450)	-	1073732..1074397 (+)	666	WP_002855897.1	acylneuraminate cytidylyltransferase family protein	-
J3Q12_RS05455 (J3Q12_05455)	-	1074385..1075218 (+)	834	WP_002855772.1	CatB-related O-acetyltransferase	-
J3Q12_RS05460 (J3Q12_05460)	waaV	1075210..1076022 (-)	813	WP_100625530.1	glycosyltransferase family 2 protein	-
J3Q12_RS05465 (J3Q12_05465)	waaF	1076081..1077040 (+)	960	WP_002856368.1	lipopolysaccharide heptosyltransferase II	Regulator
J3Q12_RS05470 (J3Q12_05470)	gmhA	1077021..1077581 (-)	561	WP_002855785.1	D-sedoheptulose 7-phosphate isomerase	-
J3Q12_RS05475 (J3Q12_05475)	rfaE1	1077578..1078972 (-)	1395	WP_032581686.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
J3Q12_RS05480 (J3Q12_05480)	rfaD	1078965..1079918 (-)	954	WP_002856483.1	ADP-glyceromanno-heptose 6-epimerase	-
J3Q12_RS05485 (J3Q12_05485)	gmhB	1079919..1080479 (-)	561	WP_002911679.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
J3Q12_RS05490 (J3Q12_05490)	-	1080561..1080863 (+)	303	WP_002852762.1	cytochrome c	-
J3Q12_RS05495 (J3Q12_05495)	ccoS	1080886..1081092 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36719.17 Da
• Isoelectric Point: 10.1941

>NTDB_id=546560 J3Q12_RS05465 WP_002856368.1 1076081..1077040(+) (waaF) [Campylobacter jejuni strain GB28]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide

• Length: 960 bp

>NTDB_id=546560 J3Q12_RS05465 WP_002856368.1 1076081..1077040(+) (waaF) [Campylobacter jejuni strain GB28]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (95-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	95.611	100	0.956