Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   J3Q12_RS03230 Genome accession   NZ_CP071582
Coordinates   629478..629915 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain GB28     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624478..634915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q12_RS03210 (J3Q12_03210) kdpD 624966..626897 (+) 1932 WP_002856839.1 sensor histidine kinase KdpD -
  J3Q12_RS03215 (J3Q12_03215) uvrB 626892..628865 (-) 1974 WP_002856888.1 excinuclease ABC subunit UvrB -
  J3Q12_RS03220 (J3Q12_03220) - 629019..629249 (+) 231 WP_002852327.1 hypothetical protein -
  J3Q12_RS03225 (J3Q12_03225) - 629239..629481 (+) 243 WP_002854947.1 hypothetical protein -
  J3Q12_RS03230 (J3Q12_03230) Cj0683 629478..629915 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J3Q12_RS03235 (J3Q12_03235) priA 629897..631750 (+) 1854 WP_002856756.1 primosomal protein N' -
  J3Q12_RS03240 (J3Q12_03240) cipA 631760..633154 (-) 1395 WP_002896028.1 DUF2972 domain-containing protein -
  J3Q12_RS03245 (J3Q12_03245) ispG 633300..634373 (+) 1074 WP_100626487.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=546555 J3Q12_RS03230 WP_002852324.1 629478..629915(+) (Cj0683) [Campylobacter jejuni strain GB28]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=546555 J3Q12_RS03230 WP_002852324.1 629478..629915(+) (Cj0683) [Campylobacter jejuni strain GB28]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1