Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   J3Q18_RS07040 Genome accession   NZ_CP071580
Coordinates   1395877..1396188 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain R23     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1390877..1401188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q18_RS07020 (J3Q18_07020) ctsE 1391746..1393305 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  J3Q18_RS07025 (J3Q18_07025) ctsX 1393295..1393882 (-) 588 WP_052802772.1 transformation system protein Machinery gene
  J3Q18_RS07030 (J3Q18_07030) ctsP 1393886..1394494 (-) 609 WP_052802773.1 ATP-binding protein Machinery gene
  J3Q18_RS07035 (J3Q18_07035) ctsD 1394487..1395899 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q18_RS07040 (J3Q18_07040) ctsR 1395877..1396188 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  J3Q18_RS07045 (J3Q18_07045) nifJ 1396212..1399772 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  J3Q18_RS07050 (J3Q18_07050) - 1399865..1400506 (-) 642 WP_052802735.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=546519 J3Q18_RS07040 WP_002855438.1 1395877..1396188(-) (ctsR) [Campylobacter jejuni strain R23]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=546519 J3Q18_RS07040 WP_002855438.1 1395877..1396188(-) (ctsR) [Campylobacter jejuni strain R23]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1