Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   J3Q10_RS07305 Genome accession   NZ_CP071579
Coordinates   1432765..1433352 (-) Length   195 a.a.
NCBI ID   WP_052802772.1    Uniprot ID   -
Organism   Campylobacter jejuni strain GB03     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427765..1438352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q10_RS07285 (J3Q10_07285) - 1428513..1429277 (+) 765 WP_052802770.1 TIGR02757 family protein -
  J3Q10_RS07290 (J3Q10_07290) - 1429281..1430045 (+) 765 WP_002855821.1 TSUP family transporter -
  J3Q10_RS07295 (J3Q10_07295) ctsF 1430038..1431219 (-) 1182 WP_052802771.1 type II secretion system F family protein Machinery gene
  J3Q10_RS07300 (J3Q10_07300) ctsE 1431216..1432775 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  J3Q10_RS07305 (J3Q10_07305) ctsX 1432765..1433352 (-) 588 WP_052802772.1 transformation system protein Machinery gene
  J3Q10_RS07310 (J3Q10_07310) ctsP 1433356..1433964 (-) 609 WP_052802773.1 ATP-binding protein Machinery gene
  J3Q10_RS07315 (J3Q10_07315) ctsD 1433957..1435369 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  J3Q10_RS07320 (J3Q10_07320) ctsR 1435347..1435658 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23433.52 Da        Isoelectric Point: 9.8479

>NTDB_id=546489 J3Q10_RS07305 WP_052802772.1 1432765..1433352(-) (ctsX) [Campylobacter jejuni strain GB03]
MQERIKELELRYKYFLLKRYLKYLFLIVLILVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=546489 J3Q10_RS07305 WP_052802772.1 1432765..1433352(-) (ctsX) [Campylobacter jejuni strain GB03]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATATTTTTTACTTAAAAGATATTTAAAATATTTATTTTTAAT
TGTTTTAATCTTAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCACAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

97.949

100

0.979