Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | J3Q20_RS05560 | Genome accession | NZ_CP071578 |
| Coordinates | 1089444..1090403 (+) | Length | 319 a.a. |
| NCBI ID | WP_002856368.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain R72 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1071761..1100258 | 1089444..1090403 | within | 0 |
Gene organization within MGE regions
Location: 1071761..1100258
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J3Q20_RS05475 (J3Q20_05475) | pglI | 1071761..1072690 (-) | 930 | WP_002856262.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| J3Q20_RS05480 (J3Q20_05480) | pglH | 1072683..1073762 (-) | 1080 | WP_002911763.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| J3Q20_RS05485 (J3Q20_05485) | pglK | 1073759..1075453 (-) | 1695 | WP_002856016.1 | ABC-type lipopolysaccharide transporter PglK | - |
| J3Q20_RS05490 (J3Q20_05490) | galE | 1075447..1076433 (-) | 987 | WP_002856461.1 | UDP-glucose 4-epimerase GalE | - |
| J3Q20_RS05495 (J3Q20_05495) | - | 1076491..1077285 (-) | 795 | WP_002856546.1 | 3'-5' exonuclease | - |
| J3Q20_RS05500 (J3Q20_05500) | waaC | 1077351..1078379 (+) | 1029 | WP_052822536.1 | lipopolysaccharide heptosyltransferase I | - |
| J3Q20_RS05505 (J3Q20_05505) | htrB | 1078369..1079256 (+) | 888 | WP_002855840.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| J3Q20_RS05510 (J3Q20_05510) | - | 1079253..1080801 (+) | 1549 | Protein_1076 | glycosyltransferase | - |
| J3Q20_RS05515 (J3Q20_05515) | - | 1080805..1081974 (+) | 1170 | WP_002852863.1 | glycosyltransferase family 2 protein | - |
| J3Q20_RS05520 (J3Q20_05520) | - | 1082044..1083087 (+) | 1044 | WP_002912176.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| J3Q20_RS05525 (J3Q20_05525) | - | 1083073..1083978 (-) | 906 | WP_002852740.1 | glycosyltransferase family 2 protein | - |
| J3Q20_RS05530 (J3Q20_05530) | - | 1084067..1084942 (+) | 876 | WP_002869021.1 | alpha-2,3-sialyltransferase | - |
| J3Q20_RS05535 (J3Q20_05535) | neuB | 1084943..1085983 (+) | 1041 | WP_002870496.1 | N-acetylneuraminate synthase | - |
| J3Q20_RS05540 (J3Q20_05540) | neuC | 1085980..1087098 (+) | 1119 | WP_002911676.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| J3Q20_RS05545 (J3Q20_05545) | - | 1087095..1087760 (+) | 666 | WP_002855897.1 | acylneuraminate cytidylyltransferase family protein | - |
| J3Q20_RS05550 (J3Q20_05550) | - | 1087883..1088581 (+) | 699 | WP_236841646.1 | CatB-related O-acetyltransferase | - |
| J3Q20_RS05555 (J3Q20_05555) | waaV | 1088573..1089385 (-) | 813 | WP_002856066.1 | glycosyltransferase family 2 protein | - |
| J3Q20_RS05560 (J3Q20_05560) | waaF | 1089444..1090403 (+) | 960 | WP_002856368.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| J3Q20_RS05565 (J3Q20_05565) | gmhA | 1090384..1090944 (-) | 561 | WP_002855785.1 | D-sedoheptulose 7-phosphate isomerase | - |
| J3Q20_RS05570 (J3Q20_05570) | rfaE1 | 1090941..1092326 (-) | 1386 | WP_002856251.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| J3Q20_RS05575 (J3Q20_05575) | rfaD | 1092319..1093272 (-) | 954 | WP_002856483.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| J3Q20_RS05580 (J3Q20_05580) | gmhB | 1093273..1093833 (-) | 561 | WP_002911679.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| J3Q20_RS05585 (J3Q20_05585) | - | 1093915..1094217 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| J3Q20_RS05590 (J3Q20_05590) | ccoS | 1094240..1094446 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| J3Q20_RS05595 (J3Q20_05595) | - | 1094443..1096800 (-) | 2358 | WP_079254191.1 | heavy metal translocating P-type ATPase | - |
| J3Q20_RS05600 (J3Q20_05600) | rho | 1096909..1098207 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| J3Q20_RS05605 (J3Q20_05605) | dnaX | 1098211..1099740 (+) | 1530 | WP_002855902.1 | DNA polymerase III subunit gamma/tau | - |
| J3Q20_RS05610 (J3Q20_05610) | - | 1099737..1100258 (-) | 522 | WP_052805401.1 | DUF2165 family protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36719.17 Da Isoelectric Point: 10.1941
>NTDB_id=546451 J3Q20_RS05560 WP_002856368.1 1089444..1090403(+) (waaF) [Campylobacter jejuni strain R72]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL
Nucleotide
Download Length: 960 bp
>NTDB_id=546451 J3Q20_RS05560 WP_002856368.1 1089444..1090403(+) (waaF) [Campylobacter jejuni strain R72]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAACTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAACTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
95.611 |
100 |
0.956 |