Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J3Q16_RS06485 Genome accession   NZ_CP071575
Coordinates   1275814..1276782 (+) Length   322 a.a.
NCBI ID   WP_002893972.1    Uniprot ID   A0A3H8JWJ4
Organism   Campylobacter jejuni strain RM3147     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270814..1281782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q16_RS06460 (J3Q16_06460) cdsA 1271721..1272446 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  J3Q16_RS06465 (J3Q16_06465) - 1272455..1272793 (-) 339 WP_002855905.1 hypothetical protein -
  J3Q16_RS06470 (J3Q16_06470) - 1272795..1274102 (-) 1308 WP_002856257.1 NFACT family protein -
  J3Q16_RS06475 (J3Q16_06475) mobA 1274164..1274739 (+) 576 WP_002855734.1 molybdenum cofactor guanylyltransferase -
  J3Q16_RS06480 (J3Q16_06480) pldA 1274736..1275725 (+) 990 WP_002855844.1 phospholipase A -
  J3Q16_RS06485 (J3Q16_06485) ceuB 1275814..1276782 (+) 969 WP_002893972.1 ABC transporter permease Machinery gene
  J3Q16_RS06490 (J3Q16_06490) ceuC 1276775..1277713 (+) 939 WP_002856142.1 iron chelate uptake ABC transporter family permease subunit -
  J3Q16_RS06495 (J3Q16_06495) ceuD 1277710..1278465 (+) 756 WP_002856278.1 ABC transporter ATP-binding protein -
  J3Q16_RS06500 (J3Q16_06500) ceuB 1278478..1279470 (+) 993 WP_052822605.1 enterochelin ABC transporter substrate-binding protein CeuB -
  J3Q16_RS06505 (J3Q16_06505) - 1279624..1279845 (+) 222 WP_002856036.1 hypothetical protein -
  J3Q16_RS06510 (J3Q16_06510) - 1279846..1280127 (+) 282 WP_002856297.1 type II toxin-antitoxin system RelE/ParE family toxin -
  J3Q16_RS06520 (J3Q16_06520) - 1280487..1281041 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35425.35 Da        Isoelectric Point: 9.6678

>NTDB_id=546375 J3Q16_RS06485 WP_002893972.1 1275814..1276782(+) (ceuB) [Campylobacter jejuni strain RM3147]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=546375 J3Q16_RS06485 WP_002893972.1 1275814..1276782(+) (ceuB) [Campylobacter jejuni strain RM3147]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACGGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACCCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H8JWJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.689

100

0.997