Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J3Q16_RS05560 Genome accession   NZ_CP071575
Coordinates   1089477..1090436 (+) Length   319 a.a.
NCBI ID   WP_002856368.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM3147     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1071794..1102656 1089477..1090436 within 0


Gene organization within MGE regions


Location: 1071794..1102656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q16_RS05475 (J3Q16_05475) pglI 1071794..1072723 (-) 930 WP_207497885.1 glycosyltransferase family 2 protein -
  J3Q16_RS05480 (J3Q16_05480) pglH 1072716..1073795 (-) 1080 WP_002911763.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  J3Q16_RS05485 (J3Q16_05485) pglK 1073792..1075486 (-) 1695 WP_002856016.1 ABC-type lipopolysaccharide transporter PglK -
  J3Q16_RS05490 (J3Q16_05490) galE 1075480..1076466 (-) 987 WP_002856461.1 UDP-glucose 4-epimerase GalE -
  J3Q16_RS05495 (J3Q16_05495) - 1076524..1077318 (-) 795 WP_002856546.1 3'-5' exonuclease -
  J3Q16_RS05500 (J3Q16_05500) waaC 1077384..1078412 (+) 1029 WP_052822536.1 lipopolysaccharide heptosyltransferase I -
  J3Q16_RS05505 (J3Q16_05505) htrB 1078402..1079289 (+) 888 WP_002855840.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  J3Q16_RS05510 (J3Q16_05510) - 1079286..1080834 (+) 1549 Protein_1076 glycosyltransferase -
  J3Q16_RS05515 (J3Q16_05515) - 1080838..1082007 (+) 1170 WP_002852863.1 glycosyltransferase family 2 protein -
  J3Q16_RS05520 (J3Q16_05520) - 1082077..1083120 (+) 1044 WP_002912176.1 beta-1,4-N-acetylgalactosaminyltransferase -
  J3Q16_RS05525 (J3Q16_05525) - 1083106..1084011 (-) 906 WP_002852740.1 glycosyltransferase family 2 protein -
  J3Q16_RS05530 (J3Q16_05530) - 1084100..1084975 (+) 876 WP_002869021.1 alpha-2,3-sialyltransferase -
  J3Q16_RS05535 (J3Q16_05535) neuB 1084976..1086016 (+) 1041 WP_002870496.1 N-acetylneuraminate synthase -
  J3Q16_RS05540 (J3Q16_05540) neuC 1086013..1087131 (+) 1119 WP_002911676.1 UDP-N-acetylglucosamine 2-epimerase -
  J3Q16_RS05545 (J3Q16_05545) - 1087128..1087793 (+) 666 WP_002855897.1 acylneuraminate cytidylyltransferase family protein -
  J3Q16_RS05550 (J3Q16_05550) - 1087916..1088614 (+) 699 WP_236841646.1 CatB-related O-acetyltransferase -
  J3Q16_RS05555 (J3Q16_05555) waaV 1088606..1089418 (-) 813 WP_002856066.1 glycosyltransferase family 2 protein -
  J3Q16_RS05560 (J3Q16_05560) waaF 1089477..1090436 (+) 960 WP_002856368.1 lipopolysaccharide heptosyltransferase II Regulator
  J3Q16_RS05565 (J3Q16_05565) gmhA 1090417..1090977 (-) 561 WP_002855785.1 D-sedoheptulose 7-phosphate isomerase -
  J3Q16_RS05570 (J3Q16_05570) rfaE1 1090974..1092359 (-) 1386 WP_002856251.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  J3Q16_RS05575 (J3Q16_05575) rfaD 1092352..1093305 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  J3Q16_RS05580 (J3Q16_05580) gmhB 1093306..1093866 (-) 561 WP_002911679.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  J3Q16_RS05585 (J3Q16_05585) - 1093948..1094250 (+) 303 WP_002852762.1 cytochrome c -
  J3Q16_RS05590 (J3Q16_05590) ccoS 1094273..1094479 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  J3Q16_RS05595 (J3Q16_05595) - 1094476..1096833 (-) 2358 WP_079254191.1 heavy metal translocating P-type ATPase -
  J3Q16_RS05600 (J3Q16_05600) rho 1096942..1098240 (+) 1299 WP_002853705.1 transcription termination factor Rho -
  J3Q16_RS05605 (J3Q16_05605) dnaX 1098244..1099773 (+) 1530 WP_002855902.1 DNA polymerase III subunit gamma/tau -
  J3Q16_RS05610 (J3Q16_05610) - 1099770..1100291 (-) 522 WP_052805401.1 DUF2165 family protein -
  J3Q16_RS05615 (J3Q16_05615) copA 1100363..1102462 (-) 2100 WP_002856286.1 copper-translocating P-type ATPase CopA -
  J3Q16_RS05620 (J3Q16_05620) - 1102462..1102656 (-) 195 WP_002856180.1 cation transporter -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36719.17 Da        Isoelectric Point: 10.1941

>NTDB_id=546370 J3Q16_RS05560 WP_002856368.1 1089477..1090436(+) (waaF) [Campylobacter jejuni strain RM3147]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=546370 J3Q16_RS05560 WP_002856368.1 1089477..1090436(+) (waaF) [Campylobacter jejuni strain RM3147]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAACTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.611

100

0.956