Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J3Q15_RS05825 Genome accession   NZ_CP071574
Coordinates   1126852..1127811 (+) Length   319 a.a.
NCBI ID   WP_002856368.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1510     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1109170..1137148 1126852..1127811 within 0


Gene organization within MGE regions


Location: 1109170..1137148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3Q15_RS05735 (J3Q15_05735) pglI 1109170..1110099 (-) 930 WP_002856262.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  J3Q15_RS05740 (J3Q15_05740) pglH 1110092..1111171 (-) 1080 WP_002855959.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  J3Q15_RS05745 (J3Q15_05745) pglK 1111168..1112862 (-) 1695 WP_002856016.1 ABC-type lipopolysaccharide transporter PglK -
  J3Q15_RS05750 (J3Q15_05750) galE 1112856..1113842 (-) 987 WP_002856461.1 UDP-glucose 4-epimerase GalE -
  J3Q15_RS05755 (J3Q15_05755) - 1113900..1114694 (-) 795 WP_002856546.1 3'-5' exonuclease -
  J3Q15_RS05760 (J3Q15_05760) waaC 1114760..1115788 (+) 1029 WP_207436316.1 lipopolysaccharide heptosyltransferase I -
  J3Q15_RS05765 (J3Q15_05765) htrB 1115778..1116665 (+) 888 WP_002855840.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  J3Q15_RS05770 (J3Q15_05770) - 1116662..1118210 (+) 1549 Protein_1129 glycosyltransferase -
  J3Q15_RS05775 (J3Q15_05775) - 1118214..1119383 (+) 1170 WP_002852863.1 glycosyltransferase family 2 protein -
  J3Q15_RS05785 (J3Q15_05785) - 1119453..1120495 (+) 1043 Protein_1131 beta-1,4-N-acetylgalactosaminyltransferase -
  J3Q15_RS05790 (J3Q15_05790) - 1120481..1121386 (-) 906 WP_002852740.1 glycosyltransferase family 2 protein -
  J3Q15_RS05795 (J3Q15_05795) - 1121475..1122350 (+) 876 WP_002852706.1 alpha-2,3-sialyltransferase -
  J3Q15_RS05800 (J3Q15_05800) neuB 1122351..1123391 (+) 1041 WP_002852665.1 N-acetylneuraminate synthase -
  J3Q15_RS05805 (J3Q15_05805) neuC 1123388..1124506 (+) 1119 WP_002856313.1 UDP-N-acetylglucosamine 2-epimerase -
  J3Q15_RS05810 (J3Q15_05810) - 1124503..1125168 (+) 666 WP_002855897.1 acylneuraminate cytidylyltransferase family protein -
  J3Q15_RS05815 (J3Q15_05815) - 1125156..1125989 (+) 834 WP_207436322.1 CatB-related O-acetyltransferase -
  J3Q15_RS05820 (J3Q15_05820) waaV 1125981..1126793 (-) 813 WP_002856066.1 glycosyltransferase family 2 protein -
  J3Q15_RS05825 (J3Q15_05825) waaF 1126852..1127811 (+) 960 WP_002856368.1 lipopolysaccharide heptosyltransferase II Regulator
  J3Q15_RS05830 (J3Q15_05830) gmhA 1127792..1128352 (-) 561 WP_002855785.1 D-sedoheptulose 7-phosphate isomerase -
  J3Q15_RS05835 (J3Q15_05835) rfaE1 1128349..1129734 (-) 1386 WP_002856251.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  J3Q15_RS05840 (J3Q15_05840) rfaD 1129727..1130680 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  J3Q15_RS05845 (J3Q15_05845) gmhB 1130681..1131241 (-) 561 WP_002911679.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  J3Q15_RS05850 (J3Q15_05850) - 1131323..1131625 (+) 303 WP_002852762.1 cytochrome c -
  J3Q15_RS05855 (J3Q15_05855) ccoS 1131648..1131854 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  J3Q15_RS05860 (J3Q15_05860) - 1131851..1134208 (-) 2358 WP_079254191.1 heavy metal translocating P-type ATPase -
  J3Q15_RS05865 (J3Q15_05865) rho 1134317..1135615 (+) 1299 WP_002853705.1 transcription termination factor Rho -
  J3Q15_RS05870 (J3Q15_05870) dnaX 1135619..1137148 (+) 1530 WP_002855902.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36719.17 Da        Isoelectric Point: 10.1941

>NTDB_id=546343 J3Q15_RS05825 WP_002856368.1 1126852..1127811(+) (waaF) [Campylobacter jejuni strain RM1510]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=546343 J3Q15_RS05825 WP_002856368.1 1126852..1127811(+) (waaF) [Campylobacter jejuni strain RM1510]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.611

100

0.956