Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PPUTUW4_RS20560 Genome accession   NC_019670
Coordinates   4664026..4664661 (-) Length   211 a.a.
NCBI ID   WP_015096396.1    Uniprot ID   A0A2U1IRM6
Organism   Pseudomonas sp. UW4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4659026..4669661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPUTUW4_RS20525 (PputUW4_04046) - 4659429..4659899 (-) 471 WP_015096391.1 (2Fe-2S)-binding protein -
  PPUTUW4_RS20530 (PputUW4_04047) murB 4660140..4661159 (-) 1020 WP_015096392.1 UDP-N-acetylmuramate dehydrogenase -
  PPUTUW4_RS20535 (PputUW4_04048) - 4661156..4661620 (-) 465 WP_015096393.1 low molecular weight protein-tyrosine-phosphatase -
  PPUTUW4_RS20540 (PputUW4_04049) kdsB 4661620..4662384 (-) 765 WP_015096394.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PPUTUW4_RS20545 (PputUW4_04050) - 4662381..4662566 (-) 186 WP_003179363.1 Trm112 family protein -
  PPUTUW4_RS20550 (PputUW4_04051) lpxK 4662591..4663601 (-) 1011 WP_015096395.1 tetraacyldisaccharide 4'-kinase -
  PPUTUW4_RS20555 (PputUW4_04052) - 4663601..4664029 (-) 429 WP_007972252.1 biopolymer transporter ExbD -
  PPUTUW4_RS20560 (PputUW4_04053) exbB 4664026..4664661 (-) 636 WP_015096396.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PPUTUW4_RS20565 (PputUW4_04054) comA 4664760..4666994 (-) 2235 WP_015096397.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PPUTUW4_RS20570 (PputUW4_04055) - 4667130..4667645 (+) 516 WP_015096398.1 DUF2062 domain-containing protein -
  PPUTUW4_RS20575 (PputUW4_04056) - 4667814..4668593 (-) 780 WP_015096399.1 ABC transporter permease -
  PPUTUW4_RS20580 (PputUW4_04057) - 4668590..4669522 (-) 933 WP_015096400.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.04 Da        Isoelectric Point: 7.3615

>NTDB_id=54620 PPUTUW4_RS20560 WP_015096396.1 4664026..4664661(-) (exbB) [Pseudomonas sp. UW4]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAQRVIHELERYVAALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=54620 PPUTUW4_RS20560 WP_015096396.1 4664026..4664661(-) (exbB) [Pseudomonas sp. UW4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTTGC
CGAGCGTCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAAGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAGGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCAAAACATGGTCGCGAGATCATGAAGGAGTGTATCGAAGAGGCCGCACAACGGGTCATCCATGAGCTCGAGCGCTACGT
CGCCGCCCTCGGCACCATCGCCGCCATGGCGCCGTTGCTGGGCCTGCTGGGTACAGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCACAGGCTCAGGCATGACCACCAACGCTTCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCC
GCGGGCCTGATGGTGGGTATCCCCGCAGTGTTTTTCCACCGTTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGATCGCGACGTGGACCTGACCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U1IRM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839

Multiple sequence alignment