Detailed information NTG0546115

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LOF66_RS17160
• Genome accession: NZ_CP087564
• Coordinates: 3426457..3427482 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain CM2010-0578/1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3421457..3432482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOF66_RS17130 (LOF66_17040)	zapB	3421541..3421786 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
LOF66_RS17135 (LOF66_17045)	rraA	3421871..3422356 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LOF66_RS17140 (LOF66_17050)	menA	3422449..3423375 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LOF66_RS17145 (LOF66_17055)	hslU	3423442..3424773 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LOF66_RS17150 (LOF66_17060)	hslV	3424783..3425313 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LOF66_RS17155 (LOF66_17065)	ftsN	3425406..3426365 (-)	960	WP_000068828.1	cell division protein FtsN	-
LOF66_RS17160 (LOF66_17070)	cytR	3426457..3427482 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LOF66_RS17165 (LOF66_17075)	priA	3427638..3429836 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LOF66_RS17170 (LOF66_17080)	rpmE	3430039..3430251 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
LOF66_RS17175 (LOF66_17085)	yiiX	3430312..3430920 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LOF66_RS17180 (LOF66_17090)	metJ	3431104..3431421 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=546115 LOF66_RS17160 WP_000644904.1 3426457..3427482(-) (cytR) [Escherichia coli strain CM2010-0578/1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=546115 LOF66_RS17160 WP_000644904.1 3426457..3427482(-) (cytR) [Escherichia coli strain CM2010-0578/1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628