Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   J2N86_RS12805 Genome accession   NZ_CP071527
Coordinates   2907316..2907990 (-) Length   224 a.a.
NCBI ID   WP_252579841.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2902316..2912990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS12780 (J2N86_12790) - 2903098..2904471 (+) 1374 WP_252579838.1 MFS transporter -
  J2N86_RS12785 (J2N86_12795) - 2904622..2904828 (+) 207 WP_058534402.1 cold-shock protein -
  J2N86_RS12790 (J2N86_12800) - 2904984..2905547 (+) 564 WP_252582455.1 NADPH-dependent FMN reductase -
  J2N86_RS12795 (J2N86_12805) ribH 2905713..2906192 (+) 480 WP_252579839.1 6,7-dimethyl-8-ribityllumazine synthase -
  J2N86_RS12800 (J2N86_12810) fni 2906209..2907234 (+) 1026 WP_252579840.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  J2N86_RS12805 (J2N86_12815) rocC 2907316..2907990 (-) 675 WP_252579841.1 ProQ/FinO family protein Regulator
  J2N86_RS12810 (J2N86_12820) dapB 2908440..2909171 (+) 732 WP_252579842.1 4-hydroxy-tetrahydrodipicolinate reductase -
  J2N86_RS12815 (J2N86_12825) - 2909250..2911649 (-) 2400 WP_252579843.1 oxidoreductase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25105.69 Da        Isoelectric Point: 10.5095

>NTDB_id=546017 J2N86_RS12805 WP_252579841.1 2907316..2907990(-) (rocC) [Legionella lytica strain PCM 2298]
MRKQELHPRTAVINKAQKNQSKKARSDALLWLAANFPAAFDNSLRIRPLKGGIMNDILLHADKAAEVGISKSKLREAVVL
FTRRLDYLACLKAREMRVDLQGNEVAEVSAEEADHAAAKIKKRVEKSVRNARKVMAEKSTTPYSTNQQPSSYQPKTANQQ
FASDDYFPTYPARSYSAQAPAQPARSAVVVKHKTTRQYDPDAVARLKEKLGLSRSLEEKKEVVE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=546017 J2N86_RS12805 WP_252579841.1 2907316..2907990(-) (rocC) [Legionella lytica strain PCM 2298]
ATGAGAAAACAGGAGCTGCACCCGCGCACCGCTGTTATTAATAAAGCTCAAAAAAACCAGTCTAAAAAAGCACGCTCTGA
TGCGTTGTTATGGCTTGCGGCTAATTTCCCTGCTGCGTTTGATAACTCATTACGAATCCGTCCATTAAAGGGTGGGATTA
TGAATGATATTTTGCTGCATGCAGATAAAGCTGCTGAGGTTGGTATTTCTAAGAGTAAACTTAGGGAGGCTGTCGTTTTA
TTTACGCGTCGTCTTGATTACTTGGCATGTTTAAAAGCACGTGAAATGCGCGTTGATTTGCAGGGTAATGAAGTAGCTGA
GGTCAGTGCTGAAGAGGCAGATCATGCTGCTGCGAAGATTAAAAAACGCGTTGAGAAAAGCGTTCGTAATGCTCGCAAAG
TGATGGCAGAAAAAAGCACAACTCCATACAGTACAAACCAGCAACCTTCAAGCTATCAACCGAAAACAGCGAACCAACAA
TTTGCTTCAGATGATTATTTTCCTACTTATCCCGCTCGTTCGTATTCAGCACAAGCACCAGCTCAGCCTGCGCGCTCAGC
AGTTGTTGTAAAACATAAAACAACACGTCAATACGATCCAGATGCAGTAGCACGCTTGAAAGAGAAGCTTGGCTTGTCGA
GAAGCCTTGAAGAAAAGAAAGAAGTAGTCGAATAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

69.13

100

0.71