Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   J2N86_RS12155 Genome accession   NZ_CP071527
Coordinates   2759096..2761312 (+) Length   738 a.a.
NCBI ID   WP_252579728.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2754096..2766312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS12135 (J2N86_12145) - 2754897..2755817 (+) 921 WP_252579724.1 polysaccharide deacetylase family protein -
  J2N86_RS12140 (J2N86_12150) - 2756033..2757304 (+) 1272 WP_252579725.1 DEAD/DEAH box helicase -
  J2N86_RS12145 (J2N86_12155) - 2757363..2758451 (+) 1089 WP_252579726.1 hypothetical protein -
  J2N86_RS12150 (J2N86_12160) - 2758605..2759024 (+) 420 WP_252579727.1 type IV pilin protein -
  J2N86_RS12155 (J2N86_12165) comEC 2759096..2761312 (+) 2217 WP_252579728.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  J2N86_RS12160 (J2N86_12170) - 2761393..2762448 (+) 1056 WP_252579729.1 MBL fold metallo-hydrolase -
  J2N86_RS12165 (J2N86_12175) - 2762596..2762853 (-) 258 WP_252579730.1 hypothetical protein -
  J2N86_RS12170 (J2N86_12180) - 2763108..2764406 (+) 1299 WP_252579731.1 protein kinase domain-containing protein -
  J2N86_RS12175 (J2N86_12185) - 2764483..2765259 (-) 777 WP_252579732.1 mechanosensitive ion channel family protein -
  J2N86_RS12180 (J2N86_12190) - 2765434..2765760 (-) 327 WP_252579733.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 84188.30 Da        Isoelectric Point: 9.3118

>NTDB_id=546016 J2N86_RS12155 WP_252579728.1 2759096..2761312(+) (comEC) [Legionella lytica strain PCM 2298]
MEIFCFFLGVLYTYTFHLYLPATTLLLFYITPRYPIILFFLLGFCLAWGHQWFIMPRGLPNSSVIQHATIQGRIASIPQQ
NPHKTQFVFELEQFNHHPAQGLVQLAWYTKAPKLQAGQHWQFSVKLKKPRNFLNPGSADYVTSLNKRHIIWTGYIRTRGA
QLIKEKNTNFDWVELRASLGDKLTQLAPNQPTAGIIEALTLNLTRHISQESWELFRRTGTTHLFGISGEHIALISGLVYW
LSRWLWSRSSKACLYIPAPYIASSCGLFIALFYAFLAGFEPPVQRALIGCFFYAICSLGKQRFTPWQIWRYALFVVLCIE
PHAVFMQGFYFSFIAVACLFLTQQRWRLKSYKSSLAIQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVGFVIVPLAL
VTMLINTSSWAALVMHPLSWSISFLLQGLHWTEQLAAVNISYSLHSIEFTLALMGALLMWVLLPINPFRWFACLWLLLPL
FPPRPNIQPGEAWVNVLDVGQGLAVSIRTQNHTLLYDTGDRFFQGSDLGKMVVLPYLDTLNIKSLDAIVISHPDKDHRGG
LQSIEAAIPVKQLLVNEPRYYHHGIKCHNYPEWQWDQVRFRFLPIHAHFKNKNNNSCILQVASANGRVLLVGDVEKEAED
YLVKTYGTQLASEVLIVPHHGSKTSSSYRFLLEIAPRYAVASLGFDNRFHFPHSKTLISMNTLNIPLYRTDECGMTQFIL
PAQGDMKPPQCFSGIHAK

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=546016 J2N86_RS12155 WP_252579728.1 2759096..2761312(+) (comEC) [Legionella lytica strain PCM 2298]
ATGGAAATTTTTTGCTTTTTCCTTGGCGTACTATATACCTACACCTTTCATCTTTATTTACCTGCAACTACCTTACTGCT
GTTTTACATTACCCCTAGGTACCCCATTATTCTCTTTTTTCTTTTGGGTTTTTGCCTAGCGTGGGGGCATCAATGGTTTA
TCATGCCCAGAGGCCTTCCCAATAGTTCCGTCATTCAACATGCCACCATTCAGGGACGAATTGCATCGATTCCCCAGCAA
AATCCACATAAAACACAATTCGTCTTTGAGTTAGAACAATTCAATCATCACCCGGCTCAAGGCTTAGTGCAATTAGCTTG
GTACACTAAAGCCCCGAAATTACAAGCTGGGCAACATTGGCAATTTTCAGTAAAGCTCAAAAAGCCACGCAATTTCCTCA
ATCCCGGCAGTGCCGACTATGTAACCTCTCTTAACAAGCGTCACATTATATGGACCGGGTATATTCGTACTCGGGGTGCA
CAATTAATTAAAGAAAAGAACACCAACTTTGATTGGGTCGAATTACGAGCCTCTCTAGGGGATAAATTGACTCAATTAGC
TCCGAATCAGCCTACTGCAGGAATTATTGAGGCATTGACCTTAAATTTAACCCGACACATTAGCCAAGAATCCTGGGAGC
TCTTCCGACGCACAGGTACCACTCATTTATTTGGAATCTCAGGTGAACATATTGCTCTCATCTCCGGACTTGTTTATTGG
CTTAGTCGCTGGTTATGGTCGCGCAGCTCCAAAGCCTGTCTCTATATACCCGCTCCCTATATTGCCAGTAGCTGTGGTTT
ATTTATCGCCTTATTTTATGCTTTTTTAGCCGGGTTCGAACCACCCGTGCAACGCGCGTTAATCGGCTGCTTCTTTTACG
CCATTTGCAGCCTGGGTAAACAACGTTTTACCCCTTGGCAAATATGGCGTTATGCCCTCTTCGTGGTGCTTTGTATCGAG
CCACATGCAGTATTTATGCAAGGATTTTATTTTTCATTCATCGCGGTAGCGTGCTTATTTTTAACCCAACAACGTTGGCG
ACTCAAAAGCTATAAAAGTAGCCTTGCCATACAATTAAGTTGTTTAATCGGTTTAATGCCGCTTACCTTGCATTGGTATT
CTTATGGGTCCATTAATGGGTTTTTGGCTAATTTATTTGCTATCCCCTTAGTGGGTTTTGTTATTGTCCCTCTAGCCTTA
GTAACCATGCTGATTAACACTTCTTCTTGGGCAGCATTGGTCATGCATCCATTGTCTTGGTCCATCAGTTTTTTATTACA
GGGATTGCATTGGACTGAGCAACTAGCTGCAGTTAATATCAGTTATTCATTGCATTCCATTGAATTCACCCTAGCCTTAA
TGGGCGCTTTACTCATGTGGGTTTTATTACCCATCAATCCTTTTCGCTGGTTCGCGTGTTTATGGTTGTTACTTCCTCTA
TTTCCCCCTCGTCCCAATATTCAGCCCGGGGAGGCATGGGTTAATGTTTTAGACGTAGGTCAAGGACTCGCTGTGAGTAT
TCGTACTCAAAATCATACATTGCTCTATGATACCGGAGATCGATTTTTTCAAGGCAGCGACCTAGGAAAAATGGTCGTTT
TACCCTATCTTGACACGTTAAACATCAAAAGCCTCGATGCCATTGTTATCAGCCATCCAGACAAAGACCATCGCGGTGGG
CTGCAATCAATCGAAGCAGCAATTCCAGTAAAACAACTATTGGTGAATGAACCACGCTACTACCACCATGGGATAAAATG
TCATAACTACCCTGAATGGCAATGGGATCAAGTACGTTTTCGTTTTTTGCCCATTCATGCCCACTTTAAAAACAAAAATA
ATAATTCCTGCATCCTGCAAGTCGCAAGTGCCAATGGGCGTGTATTATTAGTTGGGGATGTCGAAAAAGAAGCAGAAGAT
TATTTAGTAAAAACTTATGGTACTCAGCTTGCATCAGAAGTCTTAATCGTTCCACATCATGGCAGTAAAACTTCATCCTC
CTATCGTTTTTTATTGGAAATTGCCCCTCGTTATGCAGTCGCCTCCCTCGGCTTTGACAATCGTTTCCACTTTCCTCACA
GCAAAACCTTAATCAGTATGAACACCTTAAACATTCCTTTATACCGAACCGATGAATGTGGCATGACCCAATTTATCTTA
CCTGCTCAAGGGGACATGAAGCCTCCACAGTGCTTTAGTGGCATCCATGCAAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-683)

Competence protein (Competence)

(199-463)

Domain of unknown function (DUF4131) (DUF4131)

(20-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

64.354

99.593

0.641
  comEC Legionella pneumophila strain ERS1305867

64.169

99.458

0.638