Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J2N86_RS11140 Genome accession   NZ_CP071527
Coordinates   2523105..2523425 (-) Length   106 a.a.
NCBI ID   WP_252579540.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2518105..2528425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS11115 (J2N86_11120) - 2518948..2519646 (-) 699 WP_252579537.1 protein tyrosine phosphatase -
  J2N86_RS11120 (J2N86_11125) - 2519788..2520327 (+) 540 WP_252579538.1 pseudouridine synthase -
  J2N86_RS11125 (J2N86_11130) mreD 2520391..2520873 (-) 483 WP_252579539.1 rod shape-determining protein MreD -
  J2N86_RS11130 (J2N86_11135) mreC 2520873..2521778 (-) 906 WP_252582445.1 rod shape-determining protein MreC -
  J2N86_RS11135 (J2N86_11140) - 2521756..2522793 (-) 1038 WP_058535650.1 rod shape-determining protein -
  J2N86_RS11140 (J2N86_11145) comEA 2523105..2523425 (-) 321 WP_252579540.1 helix-hairpin-helix domain-containing protein Machinery gene
  J2N86_RS11145 (J2N86_11150) - 2523624..2524430 (-) 807 WP_252579541.1 hypothetical protein -
  J2N86_RS11150 (J2N86_11155) - 2524539..2525759 (-) 1221 WP_252579542.1 multidrug effflux MFS transporter -
  J2N86_RS11155 (J2N86_11160) - 2526612..2527388 (-) 777 WP_252579543.1 DUF1868 domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11370.25 Da        Isoelectric Point: 10.6228

>NTDB_id=546013 J2N86_RS11140 WP_252579540.1 2523105..2523425(-) (comEA) [Legionella lytica strain PCM 2298]
MKAQILAAALSLLAVNLSAHAGKTPSAHPEKQAVVVSQKIDLNKADVTSLIGSFKGIGKKRAEAIIAYRTSHKGFKSIEE
LSEVKGIGQRFVTANKEKLNEVFVIN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=546013 J2N86_RS11140 WP_252579540.1 2523105..2523425(-) (comEA) [Legionella lytica strain PCM 2298]
ATGAAAGCACAAATACTTGCTGCTGCATTATCATTATTGGCAGTAAACCTCTCGGCGCATGCGGGTAAAACGCCAAGCGC
TCATCCTGAGAAACAAGCTGTAGTTGTTTCCCAAAAGATTGATCTCAATAAAGCGGATGTAACTTCTTTAATTGGTTCCT
TTAAAGGCATAGGCAAGAAGCGTGCTGAGGCTATTATTGCTTATCGTACCAGTCATAAAGGTTTTAAATCAATTGAAGAG
CTTTCGGAAGTTAAGGGCATTGGGCAGCGTTTTGTTACTGCTAACAAAGAAAAATTAAATGAAGTATTTGTTATTAATTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

64.151

100

0.642
  comEA Legionella pneumophila strain ERS1305867

64.151

100

0.642