Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   J2N86_RS09280 Genome accession   NZ_CP071527
Coordinates   2107936..2108265 (-) Length   109 a.a.
NCBI ID   WP_252579115.1    Uniprot ID   -
Organism   Legionella lytica strain PCM 2298     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102936..2113265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N86_RS09260 (J2N86_09280) - 2103212..2104492 (+) 1281 WP_252579111.1 MFS transporter -
  J2N86_RS09265 (J2N86_09285) - 2104555..2105874 (-) 1320 WP_252579112.1 MFS transporter -
  J2N86_RS09270 (J2N86_09290) - 2105984..2107075 (-) 1092 WP_252579113.1 anhydro-N-acetylmuramic acid kinase -
  J2N86_RS09275 (J2N86_09295) - 2107120..2107899 (-) 780 WP_252579114.1 TatD family hydrolase -
  J2N86_RS09280 (J2N86_09300) pilZ 2107936..2108265 (-) 330 WP_252579115.1 PilZ domain-containing protein Machinery gene
  J2N86_RS09285 (J2N86_09305) - 2108275..2109168 (-) 894 WP_252579116.1 DNA polymerase III subunit -
  J2N86_RS09290 (J2N86_09310) tmk 2109171..2109803 (-) 633 WP_252579117.1 dTMP kinase -
  J2N86_RS09295 (J2N86_09315) mltG 2109803..2110801 (-) 999 WP_252579118.1 endolytic transglycosylase MltG -
  J2N86_RS09300 (J2N86_09320) fabF 2110798..2112057 (-) 1260 WP_252579119.1 beta-ketoacyl-ACP synthase II -
  J2N86_RS09305 (J2N86_09325) acpP 2112076..2112324 (-) 249 WP_006871648.1 acyl carrier protein -
  J2N86_RS09310 (J2N86_09330) fabG 2112494..2113240 (-) 747 WP_252579120.1 3-oxoacyl-ACP reductase FabG -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12301.13 Da        Isoelectric Point: 4.5006

>NTDB_id=546008 J2N86_RS09280 WP_252579115.1 2107936..2108265(-) (pilZ) [Legionella lytica strain PCM 2298]
MQQINCVFDNLSSLYAAYMPFVKGGGLFIRTQHLYELGSGLSLVVNLMNEDEFYYIDAKVVWITPVEAQASRFPGVGVQF
INDHGCDLRSKIEIYLAEMLKSQQVTDTV

Nucleotide


Download         Length: 330 bp        

>NTDB_id=546008 J2N86_RS09280 WP_252579115.1 2107936..2108265(-) (pilZ) [Legionella lytica strain PCM 2298]
ATGCAGCAAATTAATTGTGTATTTGATAACCTTTCTTCTTTATACGCAGCATACATGCCTTTTGTAAAAGGCGGCGGCTT
ATTTATTCGCACGCAGCATCTCTATGAGTTAGGCTCTGGGCTTAGTTTAGTTGTAAACTTAATGAATGAGGATGAGTTTT
ATTATATTGATGCTAAAGTAGTCTGGATTACCCCTGTGGAAGCACAAGCGAGTCGATTTCCGGGAGTAGGAGTACAATTT
ATCAATGATCATGGTTGTGATTTGCGCAGTAAAATAGAGATCTATTTAGCAGAAATGTTAAAATCACAGCAAGTAACAGA
TACGGTTTAA

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(9-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

62.037

99.083

0.615
  pilZ Legionella pneumophila strain ERS1305867

62.037

99.083

0.615