Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LOZ87_RS09135 Genome accession   NZ_CP087391
Coordinates   1851801..1852421 (-) Length   206 a.a.
NCBI ID   WP_007611720.1    Uniprot ID   A0AAI8HP04
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1846801..1857421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS09100 (LOZ87_09100) - 1847663..1848097 (+) 435 WP_003154017.1 dUTP diphosphatase -
  LOZ87_RS09105 (LOZ87_09105) - 1848188..1848294 (-) 107 Protein_1743 DUF4177 domain-containing protein -
  LOZ87_RS09110 (LOZ87_09110) - 1848507..1849328 (+) 822 WP_039063159.1 poly-gamma-glutamate hydrolase family protein -
  LOZ87_RS09115 (LOZ87_09115) - 1849437..1849586 (+) 150 WP_007410334.1 hypothetical protein -
  LOZ87_RS09120 (LOZ87_09120) - 1849573..1850403 (+) 831 WP_007410333.1 prohibitin family protein -
  LOZ87_RS09125 (LOZ87_09125) - 1850431..1850880 (-) 450 WP_003154009.1 YndM family protein -
  LOZ87_RS09130 (LOZ87_09130) - 1851034..1851462 (+) 429 WP_003154006.1 hypothetical protein -
  LOZ87_RS09135 (LOZ87_09135) dinR/lexA 1851801..1852421 (-) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  LOZ87_RS09140 (LOZ87_09140) yneA 1852578..1852889 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  LOZ87_RS09145 (LOZ87_09145) - 1852905..1853555 (+) 651 WP_003153998.1 recombinase family protein -
  LOZ87_RS09150 (LOZ87_09150) - 1853624..1853857 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  LOZ87_RS09155 (LOZ87_09155) recP/tkt 1854024..1856027 (+) 2004 WP_032865999.1 transketolase Machinery gene
  LOZ87_RS09160 (LOZ87_09160) sirA 1856179..1856625 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  LOZ87_RS09165 (LOZ87_09165) - 1856711..1856929 (+) 219 WP_003153994.1 YneF family protein -
  LOZ87_RS09170 (LOZ87_09170) - 1857003..1857176 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23046.64 Da        Isoelectric Point: 5.1645

>NTDB_id=545984 LOZ87_RS09135 WP_007611720.1 1851801..1852421(-) (dinR/lexA) [Bacillus amyloliquefaciens strain ZF57]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=545984 LOZ87_RS09135 WP_007611720.1 1851801..1852421(-) (dinR/lexA) [Bacillus amyloliquefaciens strain ZF57]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCAAATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAI8HP04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927