Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPAKL86_RS06940 Genome accession   NC_019563
Coordinates   1432148..1433461 (-) Length   437 a.a.
NCBI ID   WP_015087647.1    Uniprot ID   K7YBC2
Organism   Helicobacter pylori Aklavik86     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427148..1438461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL86_RS06910 (HPAKL86_06810) nadC 1427611..1428432 (-) 822 WP_015087641.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPAKL86_RS06915 (HPAKL86_06815) nadA 1428432..1429442 (-) 1011 WP_015087642.1 quinolinate synthase NadA -
  HPAKL86_RS06920 (HPAKL86_06820) - 1429432..1430235 (-) 804 WP_015087643.1 phosphatidylserine decarboxylase -
  HPAKL86_RS06925 (HPAKL86_06825) - 1430232..1430735 (-) 504 WP_015087644.1 DUF6115 domain-containing protein -
  HPAKL86_RS06930 (HPAKL86_06830) - 1430748..1431242 (-) 495 WP_015087645.1 hypothetical protein -
  HPAKL86_RS06935 (HPAKL86_06835) mqnP 1431235..1432077 (-) 843 WP_232254795.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPAKL86_RS06940 (HPAKL86_06840) comEC/comE3 1432148..1433461 (-) 1314 WP_015087647.1 ComEC/Rec2 family competence protein Machinery gene
  HPAKL86_RS06945 (HPAKL86_06845) - 1433458..1434918 (-) 1461 WP_015087648.1 replicative DNA helicase -
  HPAKL86_RS06950 (HPAKL86_06850) - 1434929..1436317 (-) 1389 WP_015087649.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPAKL86_RS06955 (HPAKL86_06855) crdS 1436320..1437522 (-) 1203 WP_080021368.1 copper-sensing histidine kinase CrdS -
  HPAKL86_RS06960 (HPAKL86_06860) crdR 1437488..1438129 (-) 642 WP_015087651.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50212.28 Da        Isoelectric Point: 9.8315

>NTDB_id=54598 HPAKL86_RS06940 WP_015087647.1 1432148..1433461(-) (comEC/comE3) [Helicobacter pylori Aklavik86]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSAGMYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=54598 HPAKL86_RS06940 WP_015087647.1 1432148..1433461(-) (comEC/comE3) [Helicobacter pylori Aklavik86]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAACTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTATGAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCATTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGTGCAGGCATGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTAAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCCTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCAATCTCTTCGCCTTTATGGCTTTTAGGAGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YBC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95

Multiple sequence alignment