Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LOZ87_RS08260 Genome accession   NZ_CP087391
Coordinates   1619171..1620070 (+) Length   299 a.a.
NCBI ID   WP_039063097.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1614171..1625070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS08240 (LOZ87_08240) - 1614861..1616564 (+) 1704 WP_039063096.1 hypothetical protein -
  LOZ87_RS08245 (LOZ87_08245) - 1616561..1616842 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  LOZ87_RS08250 (LOZ87_08250) sucC 1617017..1618174 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  LOZ87_RS08255 (LOZ87_08255) sucD 1618203..1619105 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  LOZ87_RS08260 (LOZ87_08260) dprA 1619171..1620070 (+) 900 WP_039063097.1 DNA-processing protein DprA Machinery gene
  LOZ87_RS08265 (LOZ87_08265) topA 1620252..1622327 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  LOZ87_RS08270 (LOZ87_08270) trmFO 1622392..1623699 (+) 1308 WP_039063098.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LOZ87_RS08275 (LOZ87_08275) xerC 1623769..1624686 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32867.03 Da        Isoelectric Point: 8.4606

>NTDB_id=545974 LOZ87_RS08260 WP_039063097.1 1619171..1620070(+) (dprA) [Bacillus amyloliquefaciens strain ZF57]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKNSELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWIIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=545974 LOZ87_RS08260 WP_039063097.1 1619171..1620070(+) (dprA) [Bacillus amyloliquefaciens strain ZF57]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGAATTCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGATCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.234

100

0.702
  dprA Lactococcus lactis subsp. cremoris KW2

42.045

88.294

0.371