Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LOZ87_RS06390 Genome accession   NZ_CP087391
Coordinates   1217177..1218313 (+) Length   378 a.a.
NCBI ID   WP_103715897.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212177..1223313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS06370 (LOZ87_06370) - 1212626..1214071 (+) 1446 WP_039062934.1 tagaturonate reductase -
  LOZ87_RS06375 (LOZ87_06375) - 1214068..1215561 (+) 1494 WP_039062935.1 UxaA family hydrolase -
  LOZ87_RS06380 (LOZ87_06380) - 1215595..1216359 (-) 765 WP_020955677.1 sulfite exporter TauE/SafE family protein -
  LOZ87_RS06385 (LOZ87_06385) - 1216504..1216971 (-) 468 WP_039062936.1 DinB family protein -
  LOZ87_RS06390 (LOZ87_06390) rapC 1217177..1218313 (+) 1137 WP_103715897.1 tetratricopeptide repeat protein Regulator
  LOZ87_RS06395 (LOZ87_06395) - 1218303..1218437 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  LOZ87_RS06400 (LOZ87_06400) - 1218580..1219533 (+) 954 WP_003154880.1 N-acetylmuramoyl-L-alanine amidase -
  LOZ87_RS06405 (LOZ87_06405) - 1219571..1219948 (-) 378 WP_007610770.1 PH domain-containing protein -
  LOZ87_RS06410 (LOZ87_06410) - 1220059..1220664 (+) 606 WP_039062938.1 poly-gamma-glutamate hydrolase family protein -
  LOZ87_RS06415 (LOZ87_06415) - 1220803..1221393 (-) 591 WP_007610775.1 ImmA/IrrE family metallo-endopeptidase -
  LOZ87_RS06420 (LOZ87_06420) xre 1221542..1221880 (-) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  LOZ87_RS06425 (LOZ87_06425) - 1222071..1222250 (+) 180 WP_007407285.1 hypothetical protein -
  LOZ87_RS06430 (LOZ87_06430) - 1222240..1223067 (+) 828 WP_020955681.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45107.36 Da        Isoelectric Point: 4.9159

>NTDB_id=545959 LOZ87_RS06390 WP_103715897.1 1217177..1218313(+) (rapC) [Bacillus amyloliquefaciens strain ZF57]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQLE
FSELLEDIEGNQYKLTGMLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=545959 LOZ87_RS06390 WP_103715897.1 1217177..1218313(+) (rapC) [Bacillus amyloliquefaciens strain ZF57]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATCAAGCCCTTAAAAGAGGACCCTTCTCAGCTTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGAATGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAGTACCGTCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTGAATCTGTTCCAATTTTTACATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCATATGTTGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.18

100

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

41.953

100

0.421