Detailed information NTG0054595

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AYT25_RS14280
• Genome accession: NZ_AKVX01000001
• Coordinates: 2863987..2864979 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2858987..2869979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYT25_RS14260 (COA_RS0113730)	otnK	2859763..2860929 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
AYT25_RS14265 (COA_RS0113735)	ygbL	2861021..2861659 (+)	639	WP_001278994.1	aldolase	-
AYT25_RS14270 (COA_RS0113740)	ygbM	2861664..2862440 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
AYT25_RS14275 (COA_RS0113745)	ygbN	2862529..2863893 (+)	1365	WP_000104441.1	GntP family transporter	-
AYT25_RS14280 (COA_RS0113750)	rpoS	2863987..2864979 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
AYT25_RS14285 (COA_RS0113755)	nlpD	2865042..2866136 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AYT25_RS14290 (COA_RS0113760)	pcm	2866321..2866947 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AYT25_RS14295 (COA_RS0113765)	surE	2866941..2867702 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AYT25_RS14300 (COA_RS0113770)	truD	2867683..2868732 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AYT25_RS14305 (COA_RS0113775)	ispF	2868729..2869208 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AYT25_RS14310 (COA_RS0113780)	ispD	2869208..2869918 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=54595 AYT25_RS14280 WP_000081588.1 2863987..2864979(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=54595 AYT25_RS14280 WP_000081588.1 2863987..2864979(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715