Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LOZ87_RS04080 Genome accession   NZ_CP087391
Coordinates   785224..785940 (+) Length   238 a.a.
NCBI ID   WP_007408499.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 780224..790940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS04050 (LOZ87_04050) - 780404..780781 (+) 378 WP_039062771.1 DUF1992 domain-containing protein -
  LOZ87_RS04055 (LOZ87_04055) - 780791..781222 (-) 432 WP_038457280.1 Hsp20/alpha crystallin family protein -
  LOZ87_RS04060 (LOZ87_04060) - 781238..781480 (-) 243 WP_003155595.1 spore germination protein -
  LOZ87_RS04065 (LOZ87_04065) - 781495..781755 (-) 261 WP_014417185.1 spore germination protein -
  LOZ87_RS04070 (LOZ87_04070) treP 782026..783441 (+) 1416 WP_020955500.1 PTS system trehalose-specific EIIBC component -
  LOZ87_RS04075 (LOZ87_04075) treC 783517..785202 (+) 1686 WP_007408498.1 alpha,alpha-phosphotrehalase -
  LOZ87_RS04080 (LOZ87_04080) treR 785224..785940 (+) 717 WP_007408499.1 trehalose operon repressor Regulator
  LOZ87_RS04085 (LOZ87_04085) - 786073..786738 (+) 666 WP_020955501.1 NAD(P)H-dependent oxidoreductase -
  LOZ87_RS04090 (LOZ87_04090) - 786774..787535 (-) 762 WP_007408500.1 YibE/F family protein -
  LOZ87_RS04095 (LOZ87_04095) - 787532..788671 (-) 1140 WP_007408501.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27484.45 Da        Isoelectric Point: 6.9758

>NTDB_id=545936 LOZ87_RS04080 WP_007408499.1 785224..785940(+) (treR) [Bacillus amyloliquefaciens strain ZF57]
MKVNKYITIYKDMVRQIESGQRQAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=545936 LOZ87_RS04080 WP_007408499.1 785224..785940(+) (treR) [Bacillus amyloliquefaciens strain ZF57]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGCAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAACTTGGCCTCTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAGGACCGGAAGTATTTGGATCTAGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

43.22

99.16

0.429