Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   J3P57_RS05545 Genome accession   NZ_CP071519
Coordinates   1085190..1086149 (+) Length   319 a.a.
NCBI ID   WP_002856368.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1245     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1067505..1090192 1085190..1086149 within 0


Gene organization within MGE regions


Location: 1067505..1090192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3P57_RS05455 (J3P57_05455) pglI 1067505..1068434 (-) 930 WP_207497361.1 glycosyltransferase family 2 protein -
  J3P57_RS05460 (J3P57_05460) pglH 1068427..1069506 (-) 1080 WP_207497362.1 glycosyltransferase -
  J3P57_RS05465 (J3P57_05465) pglK 1069503..1071197 (-) 1695 WP_002856016.1 ABC-type lipopolysaccharide transporter PglK -
  J3P57_RS05470 (J3P57_05470) galE 1071191..1072177 (-) 987 WP_002856461.1 UDP-glucose 4-epimerase GalE -
  J3P57_RS05475 (J3P57_05475) - 1072235..1073029 (-) 795 WP_002856546.1 3'-5' exonuclease -
  J3P57_RS05480 (J3P57_05480) waaC 1073095..1074123 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  J3P57_RS05485 (J3P57_05485) htrB 1074113..1075000 (+) 888 WP_002855840.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  J3P57_RS05490 (J3P57_05490) - 1074997..1076545 (+) 1549 Protein_1068 glycosyltransferase -
  J3P57_RS05495 (J3P57_05495) - 1076549..1077718 (+) 1170 WP_002852863.1 glycosyltransferase family 2 protein -
  J3P57_RS05505 (J3P57_05505) - 1077788..1078832 (+) 1045 Protein_1070 beta-1,4-N-acetylgalactosaminyltransferase -
  J3P57_RS05510 (J3P57_05510) - 1078818..1079723 (-) 906 WP_002852740.1 glycosyltransferase family 2 protein -
  J3P57_RS05515 (J3P57_05515) - 1079812..1080687 (+) 876 WP_002869021.1 alpha-2,3-sialyltransferase -
  J3P57_RS05520 (J3P57_05520) neuB 1080688..1081728 (+) 1041 WP_002870496.1 N-acetylneuraminate synthase -
  J3P57_RS05525 (J3P57_05525) neuC 1081725..1082843 (+) 1119 WP_002911676.1 UDP-N-acetylglucosamine 2-epimerase -
  J3P57_RS05530 (J3P57_05530) - 1082840..1083505 (+) 666 WP_002855897.1 acylneuraminate cytidylyltransferase family protein -
  J3P57_RS05535 (J3P57_05535) - 1083493..1084326 (+) 834 WP_002855772.1 CatB-related O-acetyltransferase -
  J3P57_RS05540 (J3P57_05540) waaV 1084318..1085131 (-) 814 Protein_1077 glycosyltransferase family 2 protein -
  J3P57_RS05545 (J3P57_05545) waaF 1085190..1086149 (+) 960 WP_002856368.1 lipopolysaccharide heptosyltransferase II Regulator
  J3P57_RS05550 (J3P57_05550) gmhA 1086130..1086690 (-) 561 WP_002855785.1 D-sedoheptulose 7-phosphate isomerase -
  J3P57_RS05555 (J3P57_05555) rfaE1 1086687..1088072 (-) 1386 WP_207497364.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  J3P57_RS05560 (J3P57_05560) rfaD 1088065..1089018 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  J3P57_RS05565 (J3P57_05565) gmhB 1089019..1089579 (-) 561 WP_002911679.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  J3P57_RS05570 (J3P57_05570) - 1089661..1089963 (+) 303 WP_002852762.1 cytochrome c -
  J3P57_RS05575 (J3P57_05575) ccoS 1089986..1090192 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36719.17 Da        Isoelectric Point: 10.1941

>NTDB_id=545932 J3P57_RS05545 WP_002856368.1 1085190..1086149(+) (waaF) [Campylobacter jejuni strain RM1245]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=545932 J3P57_RS05545 WP_002856368.1 1085190..1086149(+) (waaF) [Campylobacter jejuni strain RM1245]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.611

100

0.956