Detailed information NTG0545931

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LOZ87_RS02295
• Genome accession: NZ_CP087391
• Coordinates: 455097..456227 (+)
• Length: 376 a.a.
• NCBI ID: WP_039062639.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZF57
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 450097..461227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOZ87_RS19520 (LOZ87_02275)	-	452044..452298 (+)	255	Protein_407	peptidoglycan-binding domain-containing protein	-
LOZ87_RS02280 (LOZ87_02280)	-	452718..453485 (+)	768	WP_080760371.1	YiiX/YebB-like N1pC/P60 family cysteine hydrolase	-
LOZ87_RS02285 (LOZ87_02285)	-	453548..454681 (+)	1134	WP_039062638.1	hypothetical protein	-
LOZ87_RS02290 (LOZ87_02290)	-	454757..454960 (+)	204	WP_228767510.1	DUF2651 family protein	-
LOZ87_RS02295 (LOZ87_02295)	rapC	455097..456227 (+)	1131	WP_039062639.1	Rap family tetratricopeptide repeat protein	Regulator
LOZ87_RS19430	-	456227..456361 (+)	135	WP_254922222.1	hypothetical protein	-
LOZ87_RS02300 (LOZ87_02300)	-	456721..456951 (-)	231	WP_039062640.1	hypothetical protein	-
LOZ87_RS02305 (LOZ87_02305)	-	457332..457889 (-)	558	WP_007410197.1	hypothetical protein	-
LOZ87_RS02310 (LOZ87_02310)	-	457985..458563 (-)	579	WP_181005565.1	hypothetical protein	-
LOZ87_RS02315 (LOZ87_02315)	-	458788..459054 (-)	267	WP_014416946.1	hypothetical protein	-
LOZ87_RS02320 (LOZ87_02320)	-	459160..460437 (-)	1278	WP_094032124.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44739.21 Da
• Isoelectric Point: 5.5626

>NTDB_id=545931 LOZ87_RS02295 WP_039062639.1 455097..456227(+) (rapC) [Bacillus amyloliquefaciens strain ZF57]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEKKRLWSDFAELTEKLGDFHFEKRNYVEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=545931 LOZ87_RS02295 WP_039062639.1 455097..456227(+) (rapC) [Bacillus amyloliquefaciens strain ZF57]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGAAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTCTAAATCGTGCTCGGA
CTTCTAATGAAGAAGAATATTTAGCTAAATTAAAAATCATTAATTCATTATACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAAAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGTAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• MalT-like TPR region (TPR_MalT) (145-296)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.534	99.202	0.372