Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   LOZ87_RS02225 Genome accession   NZ_CP087391
Coordinates   437183..437617 (+) Length   144 a.a.
NCBI ID   WP_007410180.1    Uniprot ID   A7Z1H0
Organism   Bacillus amyloliquefaciens strain ZF57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 432183..442617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ87_RS02195 (LOZ87_02195) - 432454..432957 (+) 504 WP_039062631.1 D-lyxose/D-mannose family sugar isomerase -
  LOZ87_RS02200 (LOZ87_02200) - 433045..433668 (+) 624 WP_039062632.1 GNAT family N-acetyltransferase -
  LOZ87_RS02205 (LOZ87_02205) - 433675..434097 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  LOZ87_RS02210 (LOZ87_02210) - 434595..435404 (+) 810 WP_012116831.1 lipid II flippase Amj family protein -
  LOZ87_RS02215 (LOZ87_02215) - 435524..436657 (+) 1134 Protein_395 IS3 family transposase -
  LOZ87_RS02220 (LOZ87_02220) - 436716..437006 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  LOZ87_RS02225 (LOZ87_02225) lrpC 437183..437617 (+) 435 WP_007410180.1 Lrp/AsnC family transcriptional regulator Machinery gene
  LOZ87_RS02230 (LOZ87_02230) - 437681..439867 (+) 2187 WP_039062795.1 DNA topoisomerase III -
  LOZ87_RS02235 (LOZ87_02235) - 440101..441186 (+) 1086 WP_039062633.1 hypothetical protein -
  LOZ87_RS02240 (LOZ87_02240) - 441167..442015 (+) 849 WP_033575066.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16492.13 Da        Isoelectric Point: 8.6776

>NTDB_id=545930 LOZ87_RS02225 WP_007410180.1 437183..437617(+) (lrpC) [Bacillus amyloliquefaciens strain ZF57]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKMNADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=545930 LOZ87_RS02225 WP_007410180.1 437183..437617(+) (lrpC) [Bacillus amyloliquefaciens strain ZF57]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAACTGGGCAG
AAAAATCAAATTGTCAGCTCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGGAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
GAACGCGGACAGCCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z1H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

80.851

97.917

0.792