Detailed information NTG0545920

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LOZ87_RS01510
• Genome accession: NZ_CP087391
• Coordinates: 270533..271654 (+)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZF57
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 265533..276654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOZ87_RS01490 (LOZ87_01490)	-	265842..266837 (-)	996	WP_007409036.1	DUF5105 domain-containing protein	-
LOZ87_RS01495 (LOZ87_01495)	-	266964..268364 (+)	1401	WP_039062537.1	YcdB/YcdC domain-containing protein	-
LOZ87_RS01500 (LOZ87_01500)	-	268565..269923 (+)	1359	WP_039062539.1	YcdB/YcdC domain-containing protein	-
LOZ87_RS01505 (LOZ87_01505)	-	269920..270423 (-)	504	WP_039062541.1	M15 family metallopeptidase	-
LOZ87_RS01510 (LOZ87_01510)	rapF	270533..271654 (+)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
LOZ87_RS01515 (LOZ87_01515)	-	271770..272549 (+)	780	WP_003156659.1	glucose 1-dehydrogenase	-
LOZ87_RS01520 (LOZ87_01520)	-	272632..274311 (+)	1680	WP_039062542.1	glycoside hydrolase family 13 protein	-
LOZ87_RS01525 (LOZ87_01525)	-	274496..275455 (+)	960	WP_029973931.1	metal ABC transporter substrate-binding protein	-
LOZ87_RS01530 (LOZ87_01530)	-	275510..276206 (+)	697	Protein_261	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=545920 LOZ87_RS01510 WP_003156660.1 270533..271654(+) (rapF) [Bacillus amyloliquefaciens strain ZF57]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=545920 LOZ87_RS01510 WP_003156660.1 270533..271654(+) (rapF) [Bacillus amyloliquefaciens strain ZF57]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTTAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGTTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACACA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAGGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402