Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LN359_RS24160 Genome accession   NZ_CP087377
Coordinates   4980563..4981588 (+) Length   341 a.a.
NCBI ID   WP_000644908.1    Uniprot ID   -
Organism   Escherichia coli strain RIVM_C019217     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4975563..4986588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN359_RS24150 (LN359_24165) rpmE 4977794..4978006 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  LN359_RS24155 (LN359_24170) priA 4978209..4980407 (+) 2199 WP_001550368.1 primosomal protein N' Machinery gene
  LN359_RS24160 (LN359_24175) cytR 4980563..4981588 (+) 1026 WP_000644908.1 DNA-binding transcriptional regulator CytR Regulator
  LN359_RS24165 (LN359_24180) ftsN 4981680..4982639 (+) 960 WP_000068834.1 cell division protein FtsN -
  LN359_RS24170 (LN359_24185) hslV 4982732..4983262 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  LN359_RS24175 (LN359_24190) hslU 4983272..4984603 (+) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  LN359_RS24180 (LN359_24195) menA 4984670..4985596 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LN359_RS24185 (LN359_24200) rraA 4985689..4986174 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  LN359_RS24190 (LN359_24205) zapB 4986259..4986504 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37847.80 Da        Isoelectric Point: 6.3842

>NTDB_id=545899 LN359_RS24160 WP_000644908.1 4980563..4981588(+) (cytR) [Escherichia coli strain RIVM_C019217]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=545899 LN359_RS24160 WP_000644908.1 4980563..4981588(+) (cytR) [Escherichia coli strain RIVM_C019217]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625