Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   J2N83_RS04600 Genome accession   NZ_CP071512
Coordinates   921169..922215 (+) Length   348 a.a.
NCBI ID   WP_053025471.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain 1b     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 916169..927215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N83_RS04575 (J2N83_04575) map 917046..917798 (+) 753 WP_053025476.1 type I methionyl aminopeptidase -
  J2N83_RS12115 - 917912..918037 (-) 126 WP_257643529.1 hypothetical protein -
  J2N83_RS11985 - 918050..918187 (-) 138 WP_245154753.1 hypothetical protein -
  J2N83_RS11990 - 918332..918769 (-) 438 Protein_915 SDR family NAD(P)-dependent oxidoreductase -
  J2N83_RS04585 (J2N83_04585) - 918841..919846 (-) 1006 Protein_916 HoxN/HupN/NixA family nickel/cobalt transporter -
  J2N83_RS04590 (J2N83_04590) - 920060..920446 (+) 387 WP_053025474.1 hypothetical protein -
  J2N83_RS04595 (J2N83_04595) liaF 920471..921172 (+) 702 WP_053025472.1 cell wall-active antibiotics response protein LiaF -
  J2N83_RS04600 (J2N83_04600) vraS 921169..922215 (+) 1047 WP_053025471.1 sensor histidine kinase Regulator
  J2N83_RS04605 (J2N83_04605) vraR 922205..922834 (+) 630 WP_053025469.1 two-component system response regulator VraR Regulator
  J2N83_RS04610 (J2N83_04610) - 922897..924108 (-) 1212 WP_053025467.1 YihY/virulence factor BrkB family protein -
  J2N83_RS04615 (J2N83_04615) - 924307..924591 (-) 285 WP_053025464.1 YtxH domain-containing protein -
  J2N83_RS04620 (J2N83_04620) - 924597..925061 (-) 465 WP_207323844.1 low molecular weight protein-tyrosine-phosphatase -
  J2N83_RS04625 (J2N83_04625) - 925203..925412 (+) 210 WP_011275380.1 DUF1128 domain-containing protein -
  J2N83_RS04630 (J2N83_04630) - 925426..926673 (+) 1248 WP_053025460.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40180.57 Da        Isoelectric Point: 5.8508

>NTDB_id=545857 J2N83_RS04600 WP_053025471.1 921169..922215(+) (vraS) [Staphylococcus haemolyticus strain 1b]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLVIILLCIIVGSILAYKINQQNQWIKS
QIEHAIEGETVGINDQNIELYNETIDLYQTLVPLNQELHRLRMKTQNLTNENYNMNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETKLEAPLDQQIPVLEKMVQESQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVIHDI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNQQDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNREDDNNDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=545857 J2N83_RS04600 WP_053025471.1 921169..922215(+) (vraS) [Staphylococcus haemolyticus strain 1b]
ATGAACCACTACTTAAGAGCTATCGGTTCAATGCTTATACTAGTTTATAGCATGTTAACCGCGTTCTTATTTATAGATAA
AGTATTTGTTAATATTATCTACTTCCAAGGTATGTTTTATACTCAAATTTTTGGGATACCTGTTTTTCTATTTTTAAATT
TAGTCATCATTTTACTTTGTATTATTGTAGGTTCAATTCTCGCATATAAAATTAATCAACAAAATCAGTGGATTAAGTCA
CAAATTGAACATGCCATTGAAGGAGAAACAGTAGGTATTAATGATCAAAATATTGAGCTTTATAACGAAACCATAGACCT
TTATCAAACATTAGTTCCGCTAAATCAAGAGTTGCACCGTTTACGAATGAAAACGCAAAACTTAACTAATGAAAATTACA
ATATGAATGATGTCAAAGTTAAGAAAATCATTGAGGATGAACGACAGAGATTAGCTCGCGAGTTACACGACTCTGTAAGT
CAACAACTTTTTGCAGCAAGTATGATGTTATCTGCAATAAAAGAAACAAAGTTAGAGGCACCGCTTGATCAACAAATACC
AGTTTTAGAGAAAATGGTTCAGGAGTCTCAACTTGAAATGCGCGCATTATTACTTCATTTAAGACCTTTAGGTCTAAAAG
ATAAATCACTAGGTGAAGGTATCAAAGATTTAGTTATTGATTTGCAAAAGAAAGTGCCTATGAAAGTCATACACGATATT
CAAGATTTCAAGGTGCCTAAAGGTATAGAAGATCATTTATTTAGAATTACACAAGAGGCTATATCAAATACGTTAAGACA
TTCAAATGGAACTAAAGTCACAGTGGAATTATTTAACCAACAAGATTATCTATTACTTCGAATTCAAGACAATGGTAAAG
GATTCAATGTTGACGAGAAATTAGAGCAAAGTTATGGATTAAAAAATATGAGAGAACGCGCATTAGAAATTGGTGCGACA
TTCCATATTGTATCGTTACCGGATTCTGGAACGAGAATAGAAGTTAAAGCACCGTTAAATAGGGAGGATGATAATAATGA
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

91.931

99.713

0.917