Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   HPAKL86_RS00280 Genome accession   NC_019563
Coordinates   48400..49815 (+) Length   471 a.a.
NCBI ID   WP_015086547.1    Uniprot ID   K7YZB8
Organism   Helicobacter pylori Aklavik86     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 43400..54815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL86_RS00250 (HPAKL86_00215) thyX 43406..44032 (-) 627 WP_000451936.1 FAD-dependent thymidylate synthase -
  HPAKL86_RS00255 (HPAKL86_00220) glmS 44054..45847 (-) 1794 WP_015086544.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  HPAKL86_RS00260 (HPAKL86_00225) - 45848..46087 (-) 240 WP_000461845.1 DUF2443 domain-containing protein -
  HPAKL86_RS00265 (HPAKL86_00230) - 46134..46670 (-) 537 WP_015086545.1 purine-nucleoside phosphorylase -
  HPAKL86_RS00270 (HPAKL86_00235) dnaA 46823..48190 (+) 1368 WP_015086546.1 chromosomal replication initiator protein DnaA -
  HPAKL86_RS00280 (HPAKL86_00240) comH 48400..49815 (+) 1416 WP_015086547.1 hypothetical protein Machinery gene
  HPAKL86_RS00290 (HPAKL86_00245) - 49999..50751 (+) 753 WP_015086548.1 exodeoxyribonuclease III -
  HPAKL86_RS00295 (HPAKL86_00250) - 50748..51374 (-) 627 WP_015086549.1 outer membrane protein -
  HPAKL86_RS00300 (HPAKL86_00255) - 51383..51736 (-) 354 WP_015086550.1 hypothetical protein -
  HPAKL86_RS00305 (HPAKL86_00260) recG 51838..53703 (+) 1866 WP_015086551.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 54133.94 Da        Isoelectric Point: 8.9333

>NTDB_id=54584 HPAKL86_RS00280 WP_015086547.1 48400..49815(+) (comH) [Helicobacter pylori Aklavik86]
MKKTLCLSFLLSLIPLQALVIELLDEIKASSSKGTFKARITDSNEPKQVLGTYKISPHQKLTLTITHIAKENSYQPLNDK
PSLETTLNPNRSVIPRNTQIVFSSKEWKDPYLNQNASLQPPKQKLQNKSYSSQQPQKFSYVDYPNKLNSKVSKNNFLAPL
NTPKTKGETRTNDTISENSNQGNGIFMVPQTEKTPSNNNTPNADTNENNENNENKDNVEKQAIRDPNIKEFACGKWVYDD
ENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQARSSTEKCKR
ARKRKDGTTRQCYVIEEPLKQAWESQYQITSQLVKAVYERPKQDDQVEPTFYETNELSYSSTRKSEVKQNELKLDNKFME
FVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEKPRAKSTPLSVENSKVVCVKKGNYLFNKI

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=54584 HPAKL86_RS00280 WP_015086547.1 48400..49815(+) (comH) [Helicobacter pylori Aklavik86]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTACTTTCTTTAATCCCCCTTCAAGCCCTTGTGATTGAACTTTTAGATGAGAT
CAAAGCTTCATCATCTAAAGGCACTTTTAAAGCCAGAATCACTGATTCTAACGAACCAAAGCAAGTTTTAGGGACTTATA
AAATCTCCCCGCACCAAAAACTCACGCTCACTATCACCCATATAGCTAAAGAAAATTCCTACCAACCCCTTAATGATAAA
CCTTCTTTAGAAACAACTCTAAACCCCAATCGTTCTGTTATCCCAAGGAACACGCAAATTGTCTTTTCTTCAAAAGAATG
GAAAGATCCTTATTTAAACCAAAACGCTTCTTTGCAACCACCCAAACAAAAGCTGCAAAACAAATCTTATTCATCGCAAC
AACCTCAAAAATTTTCCTATGTGGATTACCCTAACAAACTAAATTCTAAAGTTTCAAAAAACAATTTTTTAGCGCCTTTA
AACACTCCTAAAACAAAAGGCGAAACCAGAACAAACGACACAATTTCTGAAAACTCCAACCAAGGGAATGGGATTTTTAT
GGTGCCTCAAACAGAAAAAACACCCTCTAATAACAACACCCCTAACGCTGACACGAATGAAAATAATGAAAACAACGAAA
ATAAAGATAATGTGGAAAAACAAGCGATTAGAGATCCCAATATCAAAGAATTTGCGTGCGGGAAGTGGGTCTATGATGAT
GAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGCGACAGACATTACCCCTTG
CGACTATAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAATCTCTGTCCATAAAACAGAGCCTT
TAGAAGAACCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCTACAGAAAAATGCAAGAGA
GCTAGAAAGCGAAAAGACGGCACGACTAGGCAATGCTATGTGATAGAAGAGCCTTTAAAACAAGCATGGGAAAGTCAGTA
TCAAATCACCTCTCAATTAGTGAAAGCTGTATATGAACGCCCTAAACAAGACGATCAAGTAGAGCCCACTTTTTATGAAA
CTAATGAATTATCTTATTCTTCCACACGAAAAAGCGAAGTCAAGCAAAACGAATTGAAATTGGATAACAAATTCATGGAA
TTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTTAAAGAGAGCAGCGAATACAAAGAATGGGTTAAAAATCA
TGTGCGTTTAAAAGAAGGGGTGTGTATGGTGTTAGAAATAGAAGAAAAACCACGAGCCAAAAGCACGCCTTTGAGTGTTG
AAAATTCTAAAGTTGTTTGCGTTAAAAAGGGGAATTATTTATTCAACAAAATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K7YZB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

75.726

100

0.775

Multiple sequence alignment