Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   J2N82_RS04590 Genome accession   NZ_CP071505
Coordinates   921156..922202 (+) Length   348 a.a.
NCBI ID   WP_053025471.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain 12b     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 916156..927202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J2N82_RS04565 (J2N82_04565) map 917033..917785 (+) 753 WP_053025476.1 type I methionyl aminopeptidase -
  J2N82_RS11940 - 918037..918174 (-) 138 WP_245154753.1 hypothetical protein -
  J2N82_RS11945 - 918319..918756 (-) 438 Protein_909 SDR family NAD(P)-dependent oxidoreductase -
  J2N82_RS04575 (J2N82_04575) - 918828..919833 (-) 1006 Protein_910 HoxN/HupN/NixA family nickel/cobalt transporter -
  J2N82_RS04580 (J2N82_04580) - 920047..920433 (+) 387 WP_053025474.1 hypothetical protein -
  J2N82_RS04585 (J2N82_04585) liaF 920458..921159 (+) 702 WP_053025472.1 cell wall-active antibiotics response protein LiaF -
  J2N82_RS04590 (J2N82_04590) vraS 921156..922202 (+) 1047 WP_053025471.1 sensor histidine kinase Regulator
  J2N82_RS04595 (J2N82_04595) vraR 922192..922821 (+) 630 WP_053025469.1 two-component system response regulator VraR Regulator
  J2N82_RS04600 (J2N82_04600) - 922884..924095 (-) 1212 WP_053025467.1 YihY/virulence factor BrkB family protein -
  J2N82_RS04605 (J2N82_04605) - 924294..924578 (-) 285 WP_053025464.1 YtxH domain-containing protein -
  J2N82_RS04610 (J2N82_04610) - 924584..925048 (-) 465 WP_207323844.1 low molecular weight protein-tyrosine-phosphatase -
  J2N82_RS04615 (J2N82_04615) - 925190..925399 (+) 210 WP_011275380.1 DUF1128 domain-containing protein -
  J2N82_RS04620 (J2N82_04620) - 925413..926660 (+) 1248 WP_053025460.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40180.57 Da        Isoelectric Point: 5.8508

>NTDB_id=545791 J2N82_RS04590 WP_053025471.1 921156..922202(+) (vraS) [Staphylococcus haemolyticus strain 12b]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLVIILLCIIVGSILAYKINQQNQWIKS
QIEHAIEGETVGINDQNIELYNETIDLYQTLVPLNQELHRLRMKTQNLTNENYNMNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETKLEAPLDQQIPVLEKMVQESQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVIHDI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNQQDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNREDDNNDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=545791 J2N82_RS04590 WP_053025471.1 921156..922202(+) (vraS) [Staphylococcus haemolyticus strain 12b]
ATGAACCACTACTTAAGAGCTATCGGTTCAATGCTTATACTAGTTTATAGCATGTTAACCGCGTTCTTATTTATAGATAA
AGTATTTGTTAATATTATCTACTTCCAAGGTATGTTTTATACTCAAATTTTTGGGATACCTGTTTTTCTATTTTTAAATT
TAGTCATCATTTTACTTTGTATTATTGTAGGTTCAATTCTCGCATATAAAATTAATCAACAAAATCAGTGGATTAAGTCA
CAAATTGAACATGCCATTGAAGGAGAAACAGTAGGTATTAATGATCAAAATATTGAGCTTTATAACGAAACCATAGACCT
TTATCAAACATTAGTTCCGCTAAATCAAGAGTTGCACCGTTTACGAATGAAAACGCAAAACTTAACTAATGAAAATTACA
ATATGAATGATGTCAAAGTTAAGAAAATCATTGAGGATGAACGACAGAGATTAGCTCGCGAGTTACACGACTCTGTAAGT
CAACAACTTTTTGCAGCAAGTATGATGTTATCTGCAATAAAAGAAACAAAGTTAGAGGCACCGCTTGATCAACAAATACC
AGTTTTAGAGAAAATGGTTCAGGAGTCTCAACTTGAAATGCGCGCATTATTACTTCATTTAAGACCTTTAGGTCTAAAAG
ATAAATCACTAGGTGAAGGTATCAAAGATTTAGTTATTGATTTGCAAAAGAAAGTGCCTATGAAAGTCATACACGATATT
CAAGATTTCAAGGTGCCTAAAGGTATAGAAGATCATTTATTTAGAATTACACAAGAGGCTATATCAAATACGTTAAGACA
TTCAAATGGAACTAAAGTCACAGTGGAATTATTTAACCAACAAGATTATCTATTACTTCGAATTCAAGACAATGGTAAAG
GATTCAATGTTGACGAGAAATTAGAGCAAAGTTATGGATTAAAAAATATGAGAGAACGCGCATTAGAAATTGGTGCGACA
TTCCATATTGTATCGTTACCGGATTCTGGAACGAGAATAGAAGTTAAAGCACCGTTAAATAGGGAGGATGATAATAATGA
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

91.931

99.713

0.917