Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LO000_RS08840 Genome accession   NZ_CP087354
Coordinates   1814402..1815037 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain DB002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809402..1820037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO000_RS08815 - 1810242..1811255 (+) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -
  LO000_RS08820 murU 1811255..1811944 (+) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  LO000_RS08825 rsmG 1812032..1812664 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LO000_RS08830 - 1812686..1813468 (+) 783 WP_000057212.1 ParA family protein -
  LO000_RS08835 - 1813465..1814352 (+) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  LO000_RS08840 exbB 1814402..1815037 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LO000_RS08845 - 1815053..1815481 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  LO000_RS08850 msbA 1815478..1817205 (+) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  LO000_RS08855 lpxK 1817208..1818218 (+) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  LO000_RS08860 kdsB 1818228..1818989 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LO000_RS08865 - 1819001..1819981 (+) 981 WP_001075411.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=545783 LO000_RS08840 WP_000264037.1 1814402..1815037(+) (exbB) [Acinetobacter baumannii strain DB002]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=545783 LO000_RS08840 WP_000264037.1 1814402..1815037(+) (exbB) [Acinetobacter baumannii strain DB002]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393