Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   HPAKL117_RS07295 Genome accession   NC_019560
Coordinates   1510721..1512148 (-) Length   475 a.a.
NCBI ID   WP_015086411.1    Uniprot ID   -
Organism   Helicobacter pylori Aklavik117     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1505721..1517148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAKL117_RS07270 (HPAKL117_07315) recG 1506579..1508456 (-) 1878 WP_015086407.1 ATP-dependent DNA helicase RecG -
  HPAKL117_RS07275 (HPAKL117_07320) - 1508538..1508882 (+) 345 WP_015086408.1 hypothetical protein -
  HPAKL117_RS07280 (HPAKL117_07325) - 1508886..1509521 (+) 636 WP_015086409.1 outer membrane protein -
  HPAKL117_RS07285 (HPAKL117_07330) - 1509791..1510543 (-) 753 WP_015086410.1 exodeoxyribonuclease III -
  HPAKL117_RS07295 (HPAKL117_07335) comH 1510721..1512148 (-) 1428 WP_015086411.1 hypothetical protein Machinery gene
  HPAKL117_RS07305 (HPAKL117_07340) dnaA 1512369..1513736 (-) 1368 WP_015086412.1 chromosomal replication initiator protein DnaA -
  HPAKL117_RS07310 (HPAKL117_07345) - 1513889..1514431 (+) 543 WP_015086413.1 purine-nucleoside phosphorylase -
  HPAKL117_RS07315 (HPAKL117_07350) - 1514467..1514706 (+) 240 WP_015086414.1 DUF2443 family protein -
  HPAKL117_RS07320 (HPAKL117_07355) glmS 1514707..1516500 (+) 1794 WP_015086415.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  HPAKL117_RS07325 (HPAKL117_07360) thyX 1516521..1517147 (+) 627 WP_000451913.1 FAD-dependent thymidylate synthase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.39 Da        Isoelectric Point: 7.2024

>NTDB_id=54578 HPAKL117_RS07295 WP_015086411.1 1510721..1512148(-) (comH) [Helicobacter pylori Aklavik117]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPKQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNVPVQKPQNKPTSSQQSSQNFSYPESKLGSKNPKNSLLQPLAT
PNKTSPANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNNADINEHHESNENRDSVEKQAIRDPNVREFACGKW
VYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSSTE
KCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIEPTFYETSELAYSSTRKSEITRDELNLNE
KFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIKEQPRAKSTPLSIENSKVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=54578 HPAKL117_RS07295 WP_015086411.1 1510721..1512148(-) (comH) [Helicobacter pylori Aklavik117]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAAACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAGCCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCCAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAAATGCCTTCCTTAAATGTGCCCGTACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTTCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAACAAGCCCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAATCTTTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACAACGCTGACATTAATGAACACCATG
AAAGCAATGAAAATAGGGATAGTGTGGAAAAACAAGCCATCAGAGATCCTAATGTTAGAGAATTTGCGTGCGGGAAGTGG
GTCTATGATGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGCGACAGA
CATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTGTCCATA
AAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCTACAGAA
AAATGCAAAAGGGCTAGAGCACGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACAAGCGTG
GGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATCAGATAGAGCCGA
CTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCGATGAATTGAATTTGAATGAA
AAGTTTATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAAAGAATG
GGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAAAAGAGCAGCCACGAGCCAAAAGCACGC
CTTTAAGTATTGAAAACTCTAAAGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.858

100

0.926

Multiple sequence alignment